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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001729

染色体: Chr04 坐标: 28524294-28554887 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001729
名称SmilChr04G001729
描述CBBY-like protein
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向28524294 - 28554887 / -

ID 对照

NCBI Gene IDLOC131019609
GeneID131019609
locus_tag-
NCBI NameLOC131019609
原始查询SmilChr04G001729

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述CBBY-like protein
产物CBBY-like protein
ArabidopsisAT3G48420 (AT3G48420)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824000]
identity=81.7; qcov=0.747; evalue=2.53e-127; confidence=high
RiceOs03g0565200
-
identity=86.4; qcov=0.663; evalue=7.32e-126; confidence=high
GOGO:0016787 (hydrolase activity)
KEGG-
PfamPF00702 (Hydrolase); PF13242 (Hydrolase_like); PF13419 (HAD_2)
InterPro-
eggNOG-
NRGeneID:131019609

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057804178.1
2 Chloroplast stroma 叶绿体基质 1.00000 XP_057804178.1
3 Nucleus 细胞核 0.00000 XP_057804178.1
4 Chromosome 染色体 0.00000 XP_057804178.1
5 Centromere 着丝粒 0.00000 XP_057804178.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:28524736 G A EMS_canonical_SNV CDS_variant 1 B36
Chr4:28524764 TAG T 2bp_deletion frameshift_variant 1 C81
Chr4:28524764 TAG T 2bp_deletion CDS_variant 1 C81
Chr4:28524768 TTG T 2bp_deletion frameshift_variant 1 C81
Chr4:28524768 TTG T 2bp_deletion CDS_variant 1 C81
Chr4:28552482 C T EMS_canonical_SNV CDS_variant 1 D10
Chr4:28552490 C T EMS_canonical_SNV CDS_variant 2 A13,C13
Chr4:28552493 C T EMS_canonical_SNV CDS_variant 3 B50,B91,C81
Chr4:28552502 G A EMS_canonical_SNV CDS_variant 2 A13,C13
Chr4:28552641 G A EMS_canonical_SNV CDS_variant 2 A5,B29
Chr4:28552970 C T EMS_canonical_SNV CDS_variant 4 A24,B22,B53,C42
Chr4:28553254 G A EMS_canonical_SNV CDS_variant 2 B42,B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804178.1
340 aa
N
1
170
340
Hydrolase
HAD_2
Hydrolase_like
C
PF00702 Hydrolase 98-291 aa PF13419 HAD_2 101-296 aa PF13242 Hydrolase_like 253-312 aa
XP_057804179.1
340 aa
N
1
170
340
Hydrolase
HAD_2
Hydrolase_like
C
PF00702 Hydrolase 98-291 aa PF13419 HAD_2 101-296 aa PF13242 Hydrolase_like 253-312 aa
XP_057804180.1
300 aa
N
1
150
300
Hydrolase
HAD_2
Hydrolase_like
C
PF00702 Hydrolase 98-291 aa PF13419 HAD_2 101-296 aa PF13242 Hydrolase_like 253-300 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057804178.1 Pfam PF00702 Hydrolase Domain 98 291 4.1e-27 96.5 haloacid dehalogenase-like hydrolase
XP_057804178.1 Pfam PF13419 HAD_2 Family 101 296 1.1e-17 65.3 Haloacid dehalogenase-like hydrolase
XP_057804178.1 Pfam PF13242 Hydrolase_like Domain 253 312 1.6e-08 35.1 HAD-hyrolase-like
XP_057804179.1 Pfam PF00702 Hydrolase Domain 98 291 4.1e-27 96.5 haloacid dehalogenase-like hydrolase
XP_057804179.1 Pfam PF13419 HAD_2 Family 101 296 1.1e-17 65.3 Haloacid dehalogenase-like hydrolase
XP_057804179.1 Pfam PF13242 Hydrolase_like Domain 253 312 1.6e-08 35.1 HAD-hyrolase-like
XP_057804180.1 Pfam PF00702 Hydrolase Domain 98 291 2.9e-27 97.0 haloacid dehalogenase-like hydrolase
XP_057804180.1 Pfam PF13419 HAD_2 Family 101 296 7.8e-18 65.8 Haloacid dehalogenase-like hydrolase
XP_057804180.1 Pfam PF13242 Hydrolase_like Domain 253 300 5.1e-06 27.0 HAD-hyrolase-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057948197.1
TATGAGCTCAAGCATGAGGAGAGGATAACTCTTGGGGACAAAAAACAAAAGAAATGGCCGTTAAATCTCAACCAACATCATTCATTAGATTAAAAAAAAAACGAAAAAGGAAGGGAGAAATTGCAATGGCAACTAACGCCATCTGTTCTCCTCCACTCACAACTTCAGTCTCATCATCTTCATCGAAAAATCTCATCTTTGCAAAAAAGACTCTAGTTTTATCATCATCATCATGCTCTGGAATGGGAGCTTCAAAATTG...
XM_057948196.1
GGACCAACAAAAATTCAAAATAGTAATGCAGCAAATACATCAATATGTGAAAGGTCCAATATACCCTTCAACTTCTCCAATCCAATGAAGAAGGAAAATCTTGGTTGGTTTTTGTGTGTTTATGAGCTCAAGCATGAGGAGAGGATAACTCTTGGGGACAAAAAACAAAAGAAATGGCCGTTAAATCTCAACCAACATCATTCATTAGATTAAAAAAAAAACGAAAAAGGAAGGGAGAAATTGCAATGGCAACTAACGCC...

CDS

3 records

下载 CDS FASTA
LOC131019609
ATGGCCGTTAAATCTCAACCAACATCATTCATTAGATTAAAAAAAAAACGAAAAAGGAAGGGAGAAATTGCAATGGCAACTAACGCCATCTGTTCTCCTCCACTCACAACTTCAGTCTCATCATCTTCATCGAAAAATCTCATCTTTGCAAAAAAGACTCTAGTTTTATCATCATCATCATGCTCTGGAATGGGAGCTTCAAAATTGGGCAAGTTATCAATCAAGAAAAGAAGCGGCGAGAGATTCGGAGTGGTGAAATG...
LOC131019609
ATGGCCGTTAAATCTCAACCAACATCATTCATTAGATTAAAAAAAAAACGAAAAAGGAAGGGAGAAATTGCAATGGCAACTAACGCCATCTGTTCTCCTCCACTCACAACTTCAGTCTCATCATCTTCATCGAAAAATCTCATCTTTGCAAAAAAGACTCTAGTTTTATCATCATCATCATGCTCTGGAATGGGAGCTTCAAAATTGGGCAAGTTATCAATCAAGAAAAGAAGCGGCGAGAGATTCGGAGTGGTGAAATG...

Protein

3 records

下载 Protein FASTA
XP_057804178.1
MAVKSQPTSFIRLKKKRKRKGEIAMATNAICSPPLTTSVSSSSSKNLIFAKKTLVLSSSSCSGMGASKLGKLSIKKRSGERFGVVKCMASAAPSVLPKALLFDCDGVLVDTEKDGHRVSFNDTFAEKELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPDKAPTSEQERKEFIASLHKRKTELFMALIEKKLLPLRPGVAKLIDQALGSGVKVAVCSTSNEKAVSAVVSFLLGAERAEQIQIYAGDVVPRKKPDPAIY...
XP_057804179.1
MAVKSQPTSFIRLKKKRKRKGEIAMATNAICSPPLTTSVSSSSSKNLIFAKKTLVLSSSSCSGMGASKLGKLSIKKRSGERFGVVKCMASAAPSVLPKALLFDCDGVLVDTEKDGHRVSFNDTFAEKELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPDKAPTSEQERKEFIASLHKRKTELFMALIEKKLLPLRPGVAKLIDQALGSGVKVAVCSTSNEKAVSAVVSFLLGAERAEQIQIYAGDVVPRKKPDPAIY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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