当前解析结果
SmilChr04G001731| 统一新 Gene ID | SmilChr04G001731 |
|---|---|
| 名称 | SmilChr04G001731 |
| 描述 | ABC transporter G family member STR-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 28555160 - 28558097 / + |
| NCBI Gene ID | LOC131019612 |
|---|---|
| GeneID | 131019612 |
| locus_tag | - |
| NCBI Name | LOC131019612 |
| 原始查询 | SmilChr04G001731 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member STR-like |
| 产物 | ABC transporter G family member STR-like |
| Arabidopsis | AT3G55090 (ABCG16)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:824675] identity=48.3; qcov=0.446; evalue=1.79e-97; confidence=low |
| Rice | Os09g0401100 (ABCG21)- identity=67.3; qcov=0.981; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019612 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804184.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804184.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804184.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804184.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804184.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:28555452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C13 |
Chr4:28556618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B131,C37 |
Chr4:28556624 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr4:28556642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,C25,C60 |
Chr4:28556663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr4:28556822 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr4:28556974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,B94 |
Chr4:28557091 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr4:28557146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr4:28557380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B59,C35,C67,D11 |
Chr4:28557398 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B131,C37 |
Chr4:28557842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B46,B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804184.1PF00005
ABC_tran 64-216 aa
PF01061
ABC2_membrane 509-716 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804184.1 |
Pfam | PF00005 |
ABC_tran | Domain | 64 | 216 | 1.4e-28 | 100.9 | ABC transporter |
XP_057804184.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 509 | 716 | 2.6e-36 | 125.9 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。