Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001746`

染色体: Chr04 坐标: 28743777-28751452 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001746`
名称	SmilChr04G001746
描述	uncharacterized SmilChr04G001746
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	28743777 - 28751452 / `+`

ID 对照

NCBI Gene ID	`LOC131019623`
GeneID	`131019623`
locus_tag	`-`
NCBI Name	`LOC131019623`
原始查询	`SmilChr04G001746`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:821042]; symbol=AT3G17740; hit=AT3G17740; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:821042]; symbol=AT3G17740; hit=AT3G17740; species=arabidopsis; confidence=high
Arabidopsis	`AT3G17740` (AT3G17740) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:821042] identity=53.4; qcov=1; evalue=0; confidence=high
Rice	`Os02g0772500` - identity=48.9; qcov=0.983; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0006396 (RNA processing); GO:0035194 (regulatory ncRNA-mediated post-transcriptional gene silencing); GO:0071013 (catalytic step 2 spliceosome); GO:1902369 (negative regulation of RNA catabolic process)
KEGG	-
Pfam	PF08424 (NRDE-2)
InterPro	-
eggNOG	-
NR	GeneID:131019623

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804198.1`
2	Chromosome	染色体	0.00000	`XP_057804198.1`
3	Centromere	着丝粒	0.00000	`XP_057804198.1`
4	Chromatin	染色质	0.00000	`XP_057804198.1`
5	Telomere	端粒	0.00000	`XP_057804198.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:28744024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:28744103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B34,B47,C7,C76,D1
`Chr4:28744984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr4:28745001`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B138,B84,B9,C47
`Chr4:28745005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,C30,C49
`Chr4:28745024`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C87
`Chr4:28745055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,C30,C49
`Chr4:28745119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B63,C53
`Chr4:28745120`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,C30,C49
`Chr4:28745238`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,C41,C68
`Chr4:28745354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,B28
`Chr4:28745400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804198.1

1151 aa

576

1151

NRDE-2

PF08424 NRDE-2 274-671 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804198.1`	Pfam	`PF08424`	NRDE-2	Family	274	671	3.3e-74	250.6	NRDE-2, necessary for RNA interference

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948215.1
ATGAAACGTGGCCCCCTTATCTATATGGACCAAACCCCACCAAGCTACAAAACAAGCCCTAAATAAACTATATATATGCGCCCAAATTAAAATCACCTAAAATAATTTCTCAAGCTCTATTGGATATGGCGGAAGAGGACCAAACTACCAAAACGACGCCGCTCTTCGCCGCTTTCGCCGGCGGTGCCGCCACTGATAGTGGCAACAACGCTACGGCGAAATGGCTGCAGAACTCCAGCTTCAACACCGACCTCTCCGTC...

CDS

1 records

下载 CDS FASTA

LOC131019623
ATGGCGGAAGAGGACCAAACTACCAAAACGACGCCGCTCTTCGCCGCTTTCGCCGGCGGTGCCGCCACTGATAGTGGCAACAACGCTACGGCGAAATGGCTGCAGAACTCCAGCTTCAACACCGACCTCTCCGTCATAAACGACGCCGTTGCCAAATACAACCTCACCTACGATGAGGAACCGGAGGAAGAAGAAGACGCAGCGGAAGAAATTAATGCCAGGAAACGGCCGCCGCAGTACGAGATGGTGCCGTCAGATGC...

Protein

1 records

下载 Protein FASTA

XP_057804198.1
MAEEDQTTKTTPLFAAFAGGAATDSGNNATAKWLQNSSFNTDLSVINDAVAKYNLTYDEEPEEEEDAAEEINARKRPPQYEMVPSDASASSDEDLRRKSKKKKKRRKEESSASRASFSYAATLSSTSRKPGVEKWASSPTANEKEYYFDSRGDRDNLAFGSIYRMDVARYKLYNSKKVSGQNFFQRNKRACRLEGDNDVDALDSKLRSGGRYWSVKYAAIERHKDLKRMRVLAPRNHVKSSVADYIPLVDEGSDSGRVSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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