当前解析结果
SmilChr04G001765| 统一新 Gene ID | SmilChr04G001765 |
|---|---|
| 名称 | SmilChr04G001765 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29006607 - 29010638 / - |
| NCBI Gene ID | LOC131019626 |
|---|---|
| GeneID | 131019626 |
| locus_tag | - |
| NCBI Name | LOC131019626 |
| 原始查询 | SmilChr04G001765 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=28.2; qcov=1.05; evalue=4.51e-76; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=26.1; qcov=1; evalue=1.16e-65; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019626 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057804199.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057804199.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804199.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804199.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804199.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29007252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B100,C56 |
Chr4:29007427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:29007715 |
G |
GAA |
2bp_insertion | frameshift_variant | 156 | A1,A10,A11,A14,A20,A25,A4,A6,A7,A8,B1,B10,B100,B102,B103,B106,B107,B109,B11,B110,B111,B112,B113,B114,B115,B119,B12,B120,B121,B123,B124,B125,B127,B128,B131,B132,B134,B138,B139,B14,B15,B19,B2,B20,B28,B30,B31,B34,B36,B38,B39,B4,B40,B41,B42,B43,B44,B45,B47,B48,B49,B5,B51,B53,B54,B56,B58,B6,B60,B61,B63,B65,B68,B69,B7,B71,B72,B73,B74,B76,B77,B78,B79,B80,B81,B82,B83,B85,B86,B90,B93,B94,B95,B96,B97,B98,B99,C11,C12,C14,C15,C18,C19,C20,C22,C24,C25,C26,C28,C29,C3,C31,C32,C33,C34,C36,C38,C39,C40,C42,C44,C45,C46,C50,C51,C52,C53,C54,C55,C56,C6,C60,C61,C64,C68,C69,C71,C73,C74,C76,C77,C79,C80,C81,C83,C84,C85,C87,D1,D10,D11,D3,D4,D5,D7,D9 |
Chr4:29007815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr4:29007831 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:29007931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,C75 |
Chr4:29008008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr4:29008261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr4:29008515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B114,C71 |
Chr4:29008586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A14,B38 |
Chr4:29008665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A2,A8 |
Chr4:29009250 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B31 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804199.1PF18052
Rx_N 3-83 aa
PF00931
NB-ARC 142-312 aa
PF23559
WHD_DRP 390-459 aa
PF23598
LRR_14 513-812 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804199.1 |
Pfam | PF18052 |
Rx_N | Domain | 3 | 83 | 2e-14 | 54.1 | Rx N-terminal domain |
XP_057804199.1 |
Pfam | PF00931 |
NB-ARC | Domain | 142 | 312 | 6.3e-39 | 134.0 | NB-ARC domain |
XP_057804199.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 390 | 459 | 2.2e-20 | 73.2 | Disease resistance protein Winged helix domain |
XP_057804199.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 513 | 812 | 1.1e-15 | 58.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。