当前解析结果
SmilChr04G001777| 统一新 Gene ID | SmilChr04G001777 |
|---|---|
| 名称 | SmilChr04G001777 |
| 描述 | receptor-like protein kinase ANXUR1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29195041 - 29196009 / - |
| NCBI Gene ID | LOC131023252 |
|---|---|
| GeneID | 131023252 |
| locus_tag | - |
| NCBI Name | LOC131023252 |
| 原始查询 | SmilChr04G001777 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein kinase ANXUR1 |
| 产物 | receptor-like protein kinase ANXUR1 |
| Arabidopsis | AT3G04690 (ANX1)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:819627] identity=52.9; qcov=0.91; evalue=1.46e-99; confidence=high |
| Rice | Os01g0769700 (DRUS2)- identity=54; qcov=0.938; evalue=1.93e-103; confidence=high |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023252 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057808777.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057808777.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808777.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808777.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808777.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29195041 |
TTA |
T |
2bp_deletion | frameshift_variant | 11 | A13,B104,B63,B66,B80,C10,C53,C7,C79,C82,C84 |
Chr4:29195042 |
TA |
T |
1bp_deletion | frameshift_variant | 76 | A11,A16,A2,A21,A3,A8,A9,B100,B105,B107,B111,B112,B117,B118,B119,B12,B122,B127,B13,B18,B2,B21,B23,B28,B30,B4,B42,B43,B45,B54,B55,B56,B6,B60,B64,B69,B71,B72,B76,B78,B8,B86,B93,B96,B98,B99,C11,C16,C18,C19,C2,C20,C25,C29,C30,C31,C34,C37,C39,C43,C45,C46,C5,C62,C67,C69,C72,C74,C80,C87,C9,D10,D11,D3,D6,D8 |
Chr4:29195052 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C80 |
Chr4:29195092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:29195124 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B128 |
Chr4:29195124 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr4:29195208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B25,B40,C30,C49 |
Chr4:29195308 |
C |
T |
EMS_canonical_SNV | stop_gained | 13 | B113,B132,B15,B2,B64,B89,B96,C11,C26,C49,C60,C69,C75 |
Chr4:29195906 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B128 |
Chr4:29195908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr4:29195988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B46,B64 |
Chr4:29196005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B55,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057808777.1PF00069
Pkinase 27-286 aa
PF07714
PK_Tyr_Ser-Thr 31-288 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808777.1 |
Pfam | PF00069 |
Pkinase | Domain | 27 | 286 | 1.8e-47 | 162.7 | Protein kinase domain |
XP_057808777.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 31 | 288 | 7.7e-51 | 173.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。