当前解析结果
SmilChr04G001779| 统一新 Gene ID | SmilChr04G001779 |
|---|---|
| 名称 | SmilChr04G001779 |
| 描述 | putative receptor-like protein kinase At5g39000 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29215152 - 29219170 / + |
| NCBI Gene ID | LOC131019654 |
|---|---|
| GeneID | 131019654 |
| locus_tag | - |
| NCBI Name | LOC131019654 |
| 原始查询 | SmilChr04G001779 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative receptor-like protein kinase At5g39000 |
| 产物 | putative receptor-like protein kinase At5g39000 |
| Arabidopsis | AT3G51550 (FER)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824318] identity=37.5; qcov=0.679; evalue=5.71e-141; confidence=medium |
| Rice | Os03g0333200 (DRUS1)- identity=34.2; qcov=0.726; evalue=4.44e-126; confidence=low |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019654 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804225.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804225.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804225.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804225.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804225.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29215425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr4:29215500 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B47,C7,C76 |
Chr4:29216036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C7,D1 |
Chr4:29216057 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C49 |
Chr4:29216057 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C49 |
Chr4:29216075 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr4:29216257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B76,B86,C15,C45 |
Chr4:29216374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr4:29216494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B38,C13,C41 |
Chr4:29216663 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C44,C61,C67 |
Chr4:29216775 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C17,C22 |
Chr4:29216816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804225.1PF00069
Pkinase 434-704 aa
PF07714
PK_Tyr_Ser-Thr 437-707 aa
PF07714
PK_Tyr_Ser-Thr 846-1111 aa
PF00069
Pkinase 850-1108 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804225.1 |
Pfam | PF00069 |
Pkinase | Domain | 434 | 704 | 1.2e-72 | 245.2 | Protein kinase domain |
XP_057804225.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 437 | 707 | 5.6e-85 | 285.5 | Protein tyrosine and serine/threonine kinase |
XP_057804225.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 846 | 1111 | 5.6e-85 | 285.5 | Protein tyrosine and serine/threonine kinase |
XP_057804225.1 |
Pfam | PF00069 |
Pkinase | Domain | 850 | 1108 | 1.2e-72 | 245.2 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。