当前解析结果
SmilChr04G001798| 统一新 Gene ID | SmilChr04G001798 |
|---|---|
| 名称 | SmilChr04G001798 |
| 描述 | manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29455124 - 29456928 / + |
| NCBI Gene ID | LOC131019671 |
|---|---|
| GeneID | 131019671 |
| locus_tag | - |
| NCBI Name | LOC131019671 |
| 原始查询 | SmilChr04G001798 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like |
| 产物 | manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like |
| Arabidopsis | AT4G24730 (AT4G24730)manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:828575] identity=67.1; qcov=0.962; evalue=1.63e-148; confidence=high |
| Rice | Os07g0688000 (OsNRT3.2)- identity=63.5; qcov=1.01; evalue=4.62e-155; confidence=high |
| GO | GO:0008663 (2',3'-cyclic-nucleotide 2'-phosphodiesterase activity); GO:0030145 (manganese ion binding); GO:0047631 (ADP-ribose diphosphatase activity); GO:0047734 (CDP-glycerol diphosphatase activity) |
| KEGG | smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00149 (Metallophos) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019671 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057804243.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057804243.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057804243.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057804243.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804243.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29455738 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B54,C35 |
Chr4:29455738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,C35 |
Chr4:29455772 |
TAC |
T |
2bp_deletion | frameshift_variant | 13 | A11,B102,B124,B18,B31,B38,B39,B53,B85,C22,C38,C72,D4 |
Chr4:29455796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B53 |
Chr4:29455800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B63,C53 |
Chr4:29455818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B128,B59,C33 |
Chr4:29455840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr4:29455905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,C53 |
Chr4:29455959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B82,C16 |
Chr4:29456076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr4:29456097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B18,C9 |
Chr4:29456185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804243.1PF00149
Metallophos 19-261 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804243.1 |
Pfam | PF00149 |
Metallophos | Domain | 19 | 261 | 4.8e-12 | 47.4 | Calcineurin-like phosphoesterase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。