Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001800`

染色体: Chr04 坐标: 29465572-29471048 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001800`
名称	SmilChr04G001800
描述	uncharacterized SmilChr04G001800
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	29465572 - 29471048 / `-`

ID 对照

NCBI Gene ID	`LOC131019673`
GeneID	`131019673`
locus_tag	`-`
NCBI Name	`LOC131019673`
原始查询	`SmilChr04G001800`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837874]; symbol=AT1G13160; hit=AT1G13160; species=arabidopsis; confidence=high
产物	ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837874]; symbol=AT1G13160; hit=AT1G13160; species=arabidopsis; confidence=high
Arabidopsis	`AT1G13160` (AT1G13160) ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837874] identity=49.9; qcov=1.02; evalue=0; confidence=high
Rice	`Os04g0630000` - identity=52; qcov=0.737; evalue=4.37e-164; confidence=high
GO	GO:0000055 (ribosomal large subunit export from nucleus); GO:0005730 (nucleolus); GO:0042273 (ribosomal large subunit biogenesis)
KEGG	-
Pfam	PF08158 (SDA1_HEAT)
InterPro	-
eggNOG	-
NR	GeneID:131019673

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057804247.1`
2	Nucleolus	核仁	1.00000	`XP_057804247.1`
3	Nucleolus rim	Nucleolus rim	0.20000	`XP_057804247.1`
4	Chromosome	染色体	0.00000	`XP_057804247.1`
5	Centromere	着丝粒	0.00000	`XP_057804247.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:29465732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,D11
`Chr4:29465744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A5,B135,B46,B48,C37
`Chr4:29465772`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B66,C10,C7,C79
`Chr4:29466321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:29466694`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B62,B67,B75
`Chr4:29466697`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B66,C10,C7,C79
`Chr4:29466703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr4:29466793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr4:29466829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:29466969`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B18,C9
`Chr4:29467029`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A13,C13
`Chr4:29467777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C85,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804247.1

828 aa

414

828

SDA1_HEAT

PF08158 SDA1_HEAT 83-340 aa PF08158 SDA1_HEAT 334-486 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804247.1`	Pfam	`PF08158`	SDA1_HEAT	Repeat	83	340	7e-116	387.9	SDA1, HEAT repeat
`XP_057804247.1`	Pfam	`PF08158`	SDA1_HEAT	Repeat	334	486	7e-116	387.9	SDA1, HEAT repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009100370.1
ACAAAATCACCTAAACCCAACAAATAAAACTGAAAACGGGACAGCCGCCGCCGCCGCCGCCTCCCCTTCTTCATCACTTGTTTACTGGCCATGGCATCGGTACCGGCCTATGACATATCTGCGTCTGGACGGACATCAGGAAAGCTCAACCTCACAGCCCTGCAATCCAATATGAAAGCTGATCCCGAAGGATATAGTTCGGAGGTGTCGCTTGTTTACAATCAGTTTAAATCCTCTATCGATATCTTTGAGGAGAAAGC...

XM_057948264.1
TTGCCGTCCAATGAATTACACTCTAGTATAATTCATATTTAAATGCATGGCCCAACAAACAAAATCACCTAAACCCAACAAATAAAACTGAAAACGGGACAGCCGCCGCCGCCGCCGCCTCCCCTTCTTCATCACTTGTTTACTGGCCATGGCATCGGTACCGGCCTATGACATATCTGCGTCTGGACGGACATCAGGAAAGCTCAACCTCACAGCCCTGCAATCCAATATGAAAGCTGATCCCGAAGGATATAGTTCGG...

CDS

1 records

下载 CDS FASTA

LOC131019673
ATGGCATCGGTACCGGCCTATGACATATCTGCGTCTGGACGGACATCAGGAAAGCTCAACCTCACAGCCCTGCAATCCAATATGAAAGCTGATCCCGAAGGATATAGTTCGGAGGTGTCGCTTGTTTACAATCAGTTTAAATCCTCTATCGATATCTTTGAGGAGAAAGCCCGGTTGAATTTCACTTCGCTCAGTGGAATCTCCGCCGATTCCTCCGTCGGCGAGGACTTGGGTGATCAGGCAATGTTTTTGGCACATGT...

Protein

1 records

下载 Protein FASTA

XP_057804247.1
MASVPAYDISASGRTSGKLNLTALQSNMKADPEGYSSEVSLVYNQFKSSIDIFEEKARLNFTSLSGISADSSVGEDLGDQAMFLAHVTPFYPTELAQFPIELIEFLRTSAWNLPSGVRVQVTRALILLVNRQMIDISKTLLVFMEVQTLGDKVLRQLAFYHVIKSIRRMNQKHKNDPKNRTLQNILFGMLQQEEEAKAKRALITLCDLYRRKVWCDDRTSNAICMACFHPSSRIKIAALSFLLDFEKIKDDHDSSDSEDD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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