当前解析结果
SmilChr04G001808| 统一新 Gene ID | SmilChr04G001808 |
|---|---|
| 名称 | SmilChr04G001808 |
| 描述 | putative late blight resistance protein homolog R1A-4 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29566011 - 29569111 / + |
| NCBI Gene ID | LOC131019680 |
|---|---|
| GeneID | 131019680 |
| locus_tag | - |
| NCBI Name | LOC131019680 |
| 原始查询 | SmilChr04G001808 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-4 |
| 产物 | putative late blight resistance protein homolog R1A-4 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=26.8; qcov=0.932; evalue=6.36e-63; confidence=low |
| Rice | Os07g0186500- identity=27.4; qcov=0.971; evalue=1.18e-64; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019680 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057804251.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057804251.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057804251.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804251.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804251.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29566213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,C42 |
Chr4:29566284 |
TCA |
T |
2bp_deletion | frameshift_variant | 19 | A3,A9,B111,B12,B132,B28,B4,B55,B60,B75,B77,B98,C2,C20,C5,C72,C73,C82,D8 |
Chr4:29566287 |
GA |
G |
1bp_deletion | frameshift_variant | 19 | A3,A9,B111,B12,B132,B28,B4,B55,B60,B75,B77,B98,C2,C20,C5,C72,C73,C82,D8 |
Chr4:29566340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B17,B52,C2,C45 |
Chr4:29566441 |
TC |
T |
1bp_deletion | frameshift_variant | 4 | B125,B90,B92,C87 |
Chr4:29566441 |
TC |
T |
1bp_deletion | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:29566444 |
AAT |
A |
2bp_deletion | frameshift_variant | 4 | B125,B90,B92,C87 |
Chr4:29566444 |
AAT |
A |
2bp_deletion | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:29566447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:29566486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,C11,C69 |
Chr4:29566501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B121,B81 |
Chr4:29566530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B66,C10,C7,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804251.1PF00931
NB-ARC 151-318 aa
PF23559
WHD_DRP 404-474 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804251.1 |
Pfam | PF00931 |
NB-ARC | Domain | 151 | 318 | 4.7e-40 | 137.7 | NB-ARC domain |
XP_057804251.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 404 | 474 | 5.8e-17 | 62.2 | Disease resistance protein Winged helix domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。