当前解析结果
SmilChr04G001810| 统一新 Gene ID | SmilChr04G001810 |
|---|---|
| 名称 | SmilChr04G001810 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29583579 - 29592794 / - |
| NCBI Gene ID | LOC131019682 |
|---|---|
| GeneID | 131019682 |
| locus_tag | - |
| NCBI Name | LOC131019682 |
| 原始查询 | SmilChr04G001810 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.5; qcov=0.972; evalue=1.55e-71; confidence=low |
| Rice | Os07g0186500- identity=29.5; qcov=0.995; evalue=1.19e-76; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019682 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057804254.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057804254.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057804254.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057804254.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057804254.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29590016 |
TG |
T |
1bp_deletion | frameshift_variant | 32 | A3,B104,B109,B111,B114,B12,B125,B34,B35,B36,B38,B39,B41,B45,B63,B71,B89,B90,B92,C11,C13,C26,C41,C48,C5,C53,C61,C71,C72,C76,C87,D1 |
Chr4:29590055 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B22 |
Chr4:29590055 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B22 |
Chr4:29590064 |
C |
CT |
1bp_insertion | frameshift_variant | 13 | B122,B2,B21,B54,B59,B66,B76,B86,B95,B99,C19,C25,C79 |
Chr4:29590178 |
A |
ATC |
2bp_insertion | frameshift_variant | 18 | A3,A9,B111,B12,B132,B28,B4,B55,B60,B77,B98,C2,C20,C5,C72,C73,C82,D8 |
Chr4:29590179 |
T |
TC |
1bp_insertion | frameshift_variant | 97 | A11,A13,A19,A20,A22,A23,A24,A25,A3,A4,A5,B102,B108,B110,B111,B112,B114,B115,B117,B118,B120,B122,B124,B127,B131,B135,B136,B137,B14,B140,B18,B19,B21,B22,B28,B31,B35,B36,B38,B4,B46,B47,B48,B53,B54,B55,B58,B59,B60,B63,B65,B66,B67,B69,B70,B74,B76,B77,B78,B81,B86,B93,B95,B96,B99,C10,C13,C18,C19,C2,C21,C22,C25,C30,C32,C33,C36,C37,C39,C41,C5,C52,C55,C57,C6,C65,C68,C69,C71,C72,C73,C79,C83,D3,D4,D5,D8 |
Chr4:29590182 |
C |
CG |
1bp_insertion | frameshift_variant | 34 | A11,A13,A20,A22,A25,A5,B110,B117,B118,B122,B124,B137,B18,B19,B22,B31,B48,B53,B54,B58,B70,B74,B76,B81,B86,B93,C10,C2,C25,C36,C37,C65,D4,D5 |
Chr4:29590184 |
AT |
A |
1bp_deletion | frameshift_variant | 67 | A14,A18,A21,A6,A7,B1,B10,B100,B103,B106,B109,B11,B113,B121,B13,B134,B138,B139,B15,B17,B2,B29,B34,B37,B4,B40,B41,B44,B45,B49,B5,B52,B57,B61,B64,B7,B72,B73,B79,B80,B83,B89,B94,B97,C1,C12,C15,C20,C26,C28,C3,C38,C40,C49,C50,C51,C56,C59,C61,C64,C66,C77,C78,C81,D1,D2,D9 |
Chr4:29590185 |
T |
TA |
1bp_insertion | frameshift_variant | 101 | A11,A13,A19,A20,A22,A23,A24,A25,A3,A4,A5,A9,B102,B108,B110,B111,B112,B114,B115,B117,B118,B12,B120,B122,B124,B127,B131,B132,B135,B136,B137,B14,B140,B18,B19,B21,B28,B31,B35,B36,B38,B46,B47,B48,B53,B54,B55,B58,B59,B60,B63,B65,B66,B67,B69,B70,B74,B76,B77,B78,B81,B86,B93,B95,B96,B98,B99,C10,C13,C18,C19,C2,C21,C22,C25,C30,C32,C33,C36,C37,C39,C41,C5,C52,C55,C57,C6,C65,C68,C69,C71,C72,C73,C76,C79,C82,C83,D3,D4,D5,D8 |
Chr4:29590186 |
ACT |
A |
2bp_deletion | frameshift_variant | 20 | A10,B101,B119,B132,B24,B56,B68,B71,B85,B87,B99,C11,C44,C48,C68,C69,C70,C86,D10,D11 |
Chr4:29590194 |
TG |
T |
1bp_deletion | frameshift_variant | 152 | A11,A14,A18,A19,A20,A21,A22,A24,A25,A3,A4,A6,A7,A9,B1,B10,B100,B102,B103,B106,B11,B110,B111,B112,B113,B114,B115,B117,B118,B12,B120,B122,B124,B127,B13,B131,B132,B134,B136,B137,B138,B139,B14,B140,B15,B17,B18,B19,B2,B21,B28,B29,B31,B35,B36,B37,B38,B4,B40,B45,B47,B49,B5,B52,B53,B54,B55,B57,B58,B59,B60,B61,B63,B64,B65,B66,B67,B7,B70,B72,B73,B74,B76,B77,B78,B79,B80,B83,B86,B89,B93,B94,B95,B96,B97,B98,B99,C1,C10,C12,C15,C18,C19,C2,C20,C21,C22,C25,C26,C28,C3,C30,C32,C33,C36,C38,C39,C40,C41,C49,C5,C50,C51,C52,C55,C56,C57,C58,C59,C6,C60,C61,C64,C65,C66,C68,C69,C71,C72,C73,C77,C78,C79,C81,C82,C83,D2,D3,D4,D5,D8,D9 |
Chr4:29590197 |
T |
TC |
1bp_insertion | frameshift_variant | 168 | A11,A13,A14,A18,A19,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B100,B102,B103,B106,B108,B11,B110,B111,B112,B113,B114,B115,B117,B118,B12,B120,B121,B122,B124,B127,B13,B131,B132,B134,B135,B136,B137,B138,B139,B14,B140,B15,B17,B18,B19,B2,B21,B22,B28,B29,B31,B34,B35,B36,B37,B38,B4,B40,B41,B44,B45,B46,B47,B48,B49,B5,B53,B54,B55,B57,B58,B59,B60,B61,B63,B64,B65,B66,B67,B69,B7,B70,B72,B73,B74,B76,B77,B78,B79,B80,B81,B83,B86,B89,B93,B94,B95,B96,B97,B98,B99,C1,C10,C12,C13,C15,C18,C19,C2,C20,C21,C22,C25,C26,C28,C3,C30,C32,C33,C36,C37,C38,C39,C40,C41,C49,C5,C50,C51,C52,C55,C56,C57,C58,C59,C6,C60,C61,C64,C65,C66,C68,C69,C71,C72,C73,C76,C77,C78,C79,C81,C82,C83,D2,D3,D4,D5,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804254.1PF00931
NB-ARC 160-326 aa
PF23559
WHD_DRP 410-481 aa
PF23598
LRR_14 524-730 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804254.1 |
Pfam | PF00931 |
NB-ARC | Domain | 160 | 326 | 2.5e-38 | 132.1 | NB-ARC domain |
XP_057804254.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 410 | 481 | 3.6e-21 | 75.7 | Disease resistance protein Winged helix domain |
XP_057804254.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 524 | 730 | 2e-17 | 63.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
8 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。