Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001817`

染色体: Chr04 坐标: 29652716-29655077 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001817`
名称	SmilChr04G001817
描述	protein DEHYDRATION-INDUCED 19 homolog 5-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	29652716 - 29655077 / `-`

ID 对照

NCBI Gene ID	`LOC131019687`
GeneID	`131019687`
locus_tag	`-`
NCBI Name	`LOC131019687`
原始查询	`SmilChr04G001817`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DEHYDRATION-INDUCED 19 homolog 5-like
产物	protein DEHYDRATION-INDUCED 19 homolog 5-like
Arabidopsis	`AT5G49230` (HRB1) Drought-responsive family protein [Source:NCBI gene (formerly Entrezgene);Acc:834983] identity=29.8; qcov=0.877; evalue=9.44e-21; confidence=low
Rice	`Os01g0971100` (OsDi19-5) - identity=39.2; qcov=0.842; evalue=1.59e-37; confidence=medium
GO	-
KEGG	-
Pfam	PF05605 (zf-Di19); PF14571 (Di19_C)
InterPro	-
eggNOG	-
NR	GeneID:131019687

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057804262.1`
2	Cytoplasm	细胞质	0.40000	`XP_057804263.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057804262.1`
4	Nucleoplasm	核质	0.20000	`XP_057804263.1`
5	Cytosol	细胞质基质	0.20000	`XP_057804264.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:29653463`	`C`	`CT`	1bp_insertion	frameshift_variant	2	A21,B1
`Chr4:29653463`	`C`	`CT`	1bp_insertion	CDS_variant	2	A21,B1
`Chr4:29653483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,B90,B92,C87
`Chr4:29653530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D11,D7
`Chr4:29653541`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr4:29653593`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,B82
`Chr4:29653607`	`GGC`	`G`	2bp_deletion	frameshift_variant	1	C64
`Chr4:29653607`	`GGC`	`G`	2bp_deletion	CDS_variant	1	C64
`Chr4:29653644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr4:29653684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B30,B60,C12,C46
`Chr4:29653685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B30,B60,C12,C46
`Chr4:29653708`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A13,B50,C13,C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804262.1

226 aa

113

226

zf-Di19

PF05605 zf-Di19 43-94 aa

XP_057804263.1

204 aa

102

204

zf-Di19

Di19_C

PF05605 zf-Di19 43-94 aa PF14571 Di19_C 116-203 aa

XP_057804264.1

203 aa

102

203

zf-Di19

PF05605 zf-Di19 43-94 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804262.1`	Pfam	`PF05605`	zf-Di19	Domain	43	94	2.6e-18	66.7	Drought induced 19 protein (Di19), zinc-binding
`XP_057804263.1`	Pfam	`PF05605`	zf-Di19	Domain	43	94	1.2e-18	67.8	Drought induced 19 protein (Di19), zinc-binding
`XP_057804263.1`	Pfam	`PF14571`	Di19_C	Family	116	203	7.5e-07	30.3	Stress-induced protein Di19, C-terminal
`XP_057804264.1`	Pfam	`PF05605`	zf-Di19	Domain	43	94	1.2e-18	67.8	Drought induced 19 protein (Di19), zinc-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057948280.1
ATTAGTACGTCAAGCCAAGCCAAATATGTATTGCTATTCTTTCAGACCACAAAGACTAAATTTTACTGTGTTAGCAACTCCCATTTCTCTCTACTCTGCACGACTACTGCTTTTCCTCTTCACTCTTACACTACAATCCTTAAATTCAGTCCCAAAAATCATTGTTTCTCAGATTCTTGAAACTTGAGGAATTCACCACTACACTACTGTTTTTTTCTTTTTAGTTCTCCTCCTGTCTTTTTCATATTGGGGGAGAATAA...

XM_057948281.1
AAGCCAAGCCAAATATGTATTGCTATTCTTTCAGACCACAAAGACTAAATTTTACTGTGTTAGCAACTCCCATTTCTCTCTACTCTGCACGACTACTGCTTTTCCTCTTCACTCTTACACTACAATCCTTAAATTCAGTCCCAAAAATCATTGTTTCTCAGATTCTTGAAACTTGAGGAATTCACCACTACACTACTGTTTTTTTCTTTTTAGTTCTCCTCCTGTCTTTTTCATATTGGGGGAGAATAATCAGACAAATA...

CDS

3 records

下载 CDS FASTA

LOC131019687
ATGGATGTGGATTTCTGGGCTGCAAGAGTTCACAGCCAAATCCCTTCTGTCCAATCTTCTAGGCTCGGAAACTCTGGTAATCACTCACTGGTTGAAGATGAAGGGGGTGATGAAGTGAGAGCTTGGTTCCCTTGCCCTTTCTGTTATGTCGAAATCGAGCTTCCTATGCTTTGTGTCCATCTGCAAGAAGAGCACTGCTTTGCTTTGAAAAACGCGGTTTGTCCTATTTGTGCAGCAAACTTGGGTAGAGATGCAATTGG...

Protein

3 records

下载 Protein FASTA

XP_057804262.1
MDVDFWAARVHSQIPSVQSSRLGNSGNHSLVEDEGGDEVRAWFPCPFCYVEIELPMLCVHLQEEHCFALKNAVCPICAANLGRDAIGHFAAQHAHSIKRRKKSQKSGFWSSASSNIIRDLRELSSFLGSNSPNGKEASLDPLAPFLCTVPLPVSKDSKEDEPCVAATSDAERYAVWISTSLEACLNCIELLSAKCLSFVCELCSCSRLRCKFLELDYQLNYLVKLS

XP_057804263.1
MDVDFWAARVHSQIPSVQSSRLGNSGNHSLVEDEGGDEVRAWFPCPFCYVEIELPMLCVHLQEEHCFALKNAVCPICAANLGRDAIGHFAAQHAHSIKRRKKSQKSGFWSSASSNIIRDLRELSSFLGSNSPNGKEASLDPLAPFLCTVPLPVSKDSKEDEPCVAATSDAESRTSRLDEDKVHNHEETKQRVAFVQDLIFSTIF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器