当前解析结果
SmilChr04G001829| 统一新 Gene ID | SmilChr04G001829 |
|---|---|
| 名称 | SmilChr04G001829 |
| 描述 | plant intracellular Ras-group-related LRR protein 3-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 29818404 - 29820939 / - |
| NCBI Gene ID | LOC131019699 |
|---|---|
| GeneID | 131019699 |
| locus_tag | - |
| NCBI Name | LOC131019699 |
| 原始查询 | SmilChr04G001829 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plant intracellular Ras-group-related LRR protein 3-like |
| 产物 | plant intracellular Ras-group-related LRR protein 3-like |
| Arabidopsis | AT3G11330 (PIRL9)plant intracellular ras group-related LRR 9 [Source:NCBI gene (formerly Entrezgene);Acc:820306] identity=52.4; qcov=1.03; evalue=3.06e-158; confidence=high |
| Rice | Os02g0593600 (OsIRL2)- identity=46.6; qcov=1.03; evalue=5.63e-141; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12799 (LRR_4); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019699 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804272.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804272.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804272.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804272.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804272.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:29818848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D11,D7 |
Chr4:29819438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C54 |
Chr4:29820152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr4:29820181 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C10,C7 |
Chr4:29820244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C30,C49 |
Chr4:29820514 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C54 |
Chr4:29820589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr4:29820665 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C76,D1 |
Chr4:29820739 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B49 |
Chr4:29820739 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804272.1PF13855
LRR_8 206-252 aa
PF23598
LRR_14 214-293 aa
PF00560
LRR_1 218-239 aa
PF00560
LRR_1 264-285 aa
PF13855
LRR_8 311-366 aa
PF12799
LRR_4 333-374 aa
PF00560
LRR_1 334-355 aa
PF13855
LRR_8 356-416 aa
PF00560
LRR_1 382-403 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804272.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 206 | 252 | 5.6e-29 | 100.4 | Leucine rich repeat |
XP_057804272.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 214 | 293 | 3.7e-26 | 92.5 | Leucine-rich repeat region |
XP_057804272.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 218 | 239 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
XP_057804272.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 264 | 285 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
XP_057804272.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 311 | 366 | 5.6e-29 | 100.4 | Leucine rich repeat |
XP_057804272.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 333 | 374 | 4.3e-23 | 81.5 | Leucine Rich repeats (2 copies) |
XP_057804272.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 334 | 355 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
XP_057804272.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 356 | 416 | 5.6e-29 | 100.4 | Leucine rich repeat |
XP_057804272.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 382 | 403 | 2.2e-18 | 63.1 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。