Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001837`

染色体: Chr04 坐标: 29922245-29925504 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001837`
名称	SmilChr04G001837
描述	ferric reduction oxidase 8, mitochondrial
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	29922245 - 29925504 / `-`

ID 对照

NCBI Gene ID	`LOC131019704`
GeneID	`131019704`
locus_tag	`-`
NCBI Name	`LOC131019704`
原始查询	`SmilChr04G001837`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ferric reduction oxidase 8, mitochondrial
产物	ferric reduction oxidase 8%2C mitochondrial
Arabidopsis	`AT5G50160` (FRO8) ferric reduction oxidase 8 [Source:NCBI gene (formerly Entrezgene);Acc:835081] identity=46.7; qcov=1.03; evalue=0; confidence=high
Rice	`Os04g0578600` (OsFRO2) - identity=39.8; qcov=0.658; evalue=1.04e-89; confidence=medium
GO	GO:0005886 (plasma membrane); GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF00175 (NAD_binding_1); PF01794 (Ferric_reduct); PF08022 (FAD_binding_8); PF08030 (NAD_binding_6)
InterPro	-
eggNOG	-
NR	GeneID:131019704

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057804278.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057804278.1`
3	Cell membrane	细胞膜	0.40000	`XP_057804279.1`
4	Nucleus	细胞核	0.00000	`XP_057804278.1`
5	Chromosome	染色体	0.00000	`XP_057804278.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:29922486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:29922542`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr4:29922832`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,B53
`Chr4:29922937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,C24
`Chr4:29923097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B14,B44
`Chr4:29923267`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C16
`Chr4:29923293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,C24
`Chr4:29923473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B136,C24
`Chr4:29923669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,B17,C45,C85
`Chr4:29923832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A22,B121,B81
`Chr4:29923856`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr4:29923875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804278.1

707 aa

354

707

Ferric_reduct

FAD_binding_8

NAD_binding_6

NAD_binding_1

PF01794 Ferric_reduct 159-280 aa PF08022 FAD_binding_8 317-419 aa PF08030 NAD_binding_6 425-681 aa PF00175 NAD_binding_1 430-501 aa

XP_057804279.1

588 aa

294

588

Ferric_reduct

FAD_binding_8

NAD_binding_6

NAD_binding_1

PF01794 Ferric_reduct 40-161 aa PF08022 FAD_binding_8 198-300 aa PF08030 NAD_binding_6 306-562 aa PF00175 NAD_binding_1 311-383 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804278.1`	Pfam	`PF01794`	Ferric_reduct	Domain	159	280	3.3e-21	76.3	Ferric reductase like transmembrane component
`XP_057804278.1`	Pfam	`PF08022`	FAD_binding_8	Domain	317	419	1.8e-25	89.9	FAD-binding domain
`XP_057804278.1`	Pfam	`PF08030`	NAD_binding_6	Domain	425	681	1.1e-20	75.0	Ferric reductase NAD binding domain
`XP_057804278.1`	Pfam	`PF00175`	NAD_binding_1	Domain	430	501	3.4e-07	31.6	Oxidoreductase NAD-binding domain
`XP_057804279.1`	Pfam	`PF01794`	Ferric_reduct	Domain	40	161	2.5e-21	76.7	Ferric reductase like transmembrane component
`XP_057804279.1`	Pfam	`PF08022`	FAD_binding_8	Domain	198	300	1.1e-25	90.5	FAD-binding domain
`XP_057804279.1`	Pfam	`PF08030`	NAD_binding_6	Domain	306	562	5.9e-21	75.9	Ferric reductase NAD binding domain
`XP_057804279.1`	Pfam	`PF00175`	NAD_binding_1	Domain	311	383	1.8e-07	32.5	Oxidoreductase NAD-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948295.1
CAATGATCTCAAAAAGCTAGCTGATTGAGAGGTATGCATATATACAGCAAACTGCATATAAAAATAAATAAAAAAGAATTACTATTATTTATATCATCATGCTCGCGTCACGGTGCCAAACGACACAGTGTGTGTTTTCAGTCGCCATGATCCATTATCTCCAGTCTTGAGGCAAAACACAGTCCAAATTAGCATAATGTTTGAGATGAAAAACTAAAGAAAATGATCACACATATCCCATCACATGATATCGGTGCGAC...

XM_057948296.1
GCCTAGATTTTGTGGTCTTCACGTTCCCTCTAATCGGTCTGTCTATAATCGGGTTCATCTACTTGGAACTGAAACATCATGACGAACCAAGAAACAGTTTGATGCAGCCTAGGAAGGACTACTGCACTCACTTCTCTCTCTAGTCCACTGTTGGTGAATCCATACGTAGGTATTCTATCGGGGGCACAGATCCTCACCTCGTCTCTGTTCATCATGCTCCTTGTCTGGACATTCTATGTTCGTGTTTCTAATGACTTTAA...

CDS

2 records

下载 CDS FASTA

LOC131019704
ATGACTAGGTTGTCTCTTTTACTACTCAAGCTACTGCTGATCTTGGTATTTGCTGGTTGGGTGTCGCTTTGGGTTCTTAAGCCGACTGAGTTCTGGACAAGGAAATGGAAGGGCGCAGAGGCAAAAGCATCAGCTACCGCGTTTGGCTATAATGGCCTAGATTTTGTGGTCTTCACGTTCCCTCTAATCGGTCTGTCTATAATCGGGTTCATCTACTTGGAACTGAAACATCATGACGAACCAAGAAACAGCCTAGGAAG...

LOC131019704
ATGCTCCTTGTCTGGACATTCTATGTTCGTGTTTCTAATGACTTTAAGAAGATGACGCCGCTCAAATCATTCAAACTTAGCATATGGCAATATAAGCTGTTCAGGATGGCCACGCGCTGTGGCTTGTTATCAGAAGCCTGCCTAGCTCTGCTGCTTCTCCCCGTGCTACGAGGGATGTCCATATTCCGGTGCCTTGGCATCCAATTCGAGGCCTCGATCAAGTACCATGTCTGGCTCGGTTCTGCAATGATATTCTTCGC...

Protein

2 records

下载 Protein FASTA

XP_057804278.1
MTRLSLLLLKLLLILVFAGWVSLWVLKPTEFWTRKWKGAEAKASATAFGYNGLDFVVFTFPLIGLSIIGFIYLELKHHDEPRNSLGRTTALTSLSSPLLVNPYVGILSGAQILTSSLFIMLLVWTFYVRVSNDFKKMTPLKSFKLSIWQYKLFRMATRCGLLSEACLALLLLPVLRGMSIFRCLGIQFEASIKYHVWLGSAMIFFATLHGGGTLFIWGIKHRIQDEMWEWQKKGRIYLAGEIALATAFVMAITALPQIRR...

XP_057804279.1
MLLVWTFYVRVSNDFKKMTPLKSFKLSIWQYKLFRMATRCGLLSEACLALLLLPVLRGMSIFRCLGIQFEASIKYHVWLGSAMIFFATLHGGGTLFIWGIKHRIQDEMWEWQKKGRIYLAGEIALATAFVMAITALPQIRRKWFQIFYYTHHLYIVFILFFLFHGGDRHFYMVFPGVFLFALDKLLRVVQSRPETCILSARVFPCKAIELTLPKDSRLKYEPTSVIFLKIPSISKLQWHPFSVTSSSSADEHSISVIVKS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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