Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001844`

染色体: Chr04 坐标: 29999077-30005186 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001844`
名称	SmilChr04G001844
描述	diamine oxidase [copper-containing] 1, peroxisomal
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	29999077 - 30005186 / `+`

ID 对照

NCBI Gene ID	`LOC131019711`
GeneID	`131019711`
locus_tag	`-`
NCBI Name	`LOC131019711`
原始查询	`SmilChr04G001844`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	diamine oxidase [copper-containing] 1, peroxisomal
产物	diamine oxidase [copper-containing] 1%2C peroxisomal
Arabidopsis	`AT2G42490` (AT2G42490) Copper amine oxidase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818849] identity=81.3; qcov=0.962; evalue=0; confidence=high
Rice	`Os04g0136200` (OsDAO3) - identity=81; qcov=0.704; evalue=0; confidence=high
GO	GO:0005507 (copper ion binding); GO:0008131 (primary methylamine oxidase activity); GO:0009308 (amine metabolic process); GO:0048038 (quinone binding)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00410 (beta-Alanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01179 (Cu_amine_oxid); PF02727 (Cu_amine_oxidN2); PF02728 (Cu_amine_oxidN3)
InterPro	-
eggNOG	-
NR	GeneID:131019711

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.40000	`XP_057804285.1`
2	Peroxisome	过氧化物酶体	0.40000	`XP_057804285.1`
3	Secreted	分泌到胞外	0.20000	`XP_057804285.1`
4	Nucleus	细胞核	0.00000	`XP_057804285.1`
5	Chromosome	染色体	0.00000	`XP_057804285.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:29999478`	`T`	`TA`	1bp_insertion	frameshift_variant	47	A13,A18,A22,B104,B106,B119,B122,B132,B133,B134,B20,B30,B31,B33,B34,B39,B44,B46,B53,B57,B6,B64,B72,B75,B80,B86,B87,C14,C20,C25,C26,C29,C30,C39,C54,C56,C63,C64,C65,C66,C77,C81,C82,D10,D2,D3,D5
`Chr4:29999490`	`C`	`CT`	1bp_insertion	frameshift_variant	13	B135,B52,B75,B80,B83,C10,C11,C2,C48,C67,C69,C78,C84
`Chr4:29999518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,B99
`Chr4:29999524`	`GT`	`G`	1bp_deletion	frameshift_variant	3	B14,B15,C87
`Chr4:29999524`	`GT`	`G`	1bp_deletion	CDS_variant	3	B14,B15,C87
`Chr4:29999537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr4:29999549`	`C`	`CA`	1bp_insertion	frameshift_variant	3	B19,C37,C68
`Chr4:29999549`	`C`	`CA`	1bp_insertion	CDS_variant	3	B19,C37,C68
`Chr4:29999564`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B36,B83,C59
`Chr4:29999564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B36,B83,C59
`Chr4:29999574`	`TC`	`T`	1bp_deletion	frameshift_variant	170	A1,A10,A11,A15,A16,A2,A22,A24,A25,A3,A4,A6,A8,B1,B10,B100,B101,B102,B103,B106,B107,B108,B11,B110,B115,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B132,B133,B134,B136,B137,B138,B14,B140,B15,B16,B17,B2,B21,B23,B24,B26,B27,B28,B3,B32,B33,B35,B36,B37,B38,B39,B4,B41,B43,B44,B45,B47,B48,B5,B50,B52,B53,B56,B58,B59,B6,B61,B63,B64,B66,B67,B68,B70,B71,B73,B74,B75,B76,B77,B78,B8,B81,B83,B85,B89,B9,B90,B92,B94,B95,B96,B97,B98,B99,C1,C10,C11,C13,C14,C15,C18,C19,C2,C20,C22,C23,C24,C26,C27,C28,C3,C30,C31,C33,C34,C4,C40,C41,C42,C44,C45,C46,C47,C49,C5,C53,C54,C55,C56,C57,C58,C59,C60,C62,C63,C67,C69,C71,C72,C74,C75,C76,C79,C8,C82,C83,C85,C87,D1,D2,D3,D4,D5,D6,D9
`Chr4:29999581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804285.1

786 aa

393

786

Cu_amine_oxidN2

Cu_amine_oxidN3

Cu_amine_oxid

PF02727 Cu_amine_oxidN2 90-188 aa PF02728 Cu_amine_oxidN3 221-329 aa PF01179 Cu_amine_oxid 356-760 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804285.1`	Pfam	`PF02727`	Cu_amine_oxidN2	Domain	90	188	5.3e-06	27.3	Copper amine oxidase, N2 domain
`XP_057804285.1`	Pfam	`PF02728`	Cu_amine_oxidN3	Domain	221	329	2.8e-28	98.9	Copper amine oxidase, N3 domain
`XP_057804285.1`	Pfam	`PF01179`	Cu_amine_oxid	Domain	356	760	1.7e-152	508.7	Copper amine oxidase, enzyme domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057948302.1
TTCACCTTTTTAAAGCCCCATCACGTGTGTCTCTGTAGGGATCGCTTCACGCCTTCACCACCTCTCTCTCTCCCCCTCTCTCTCCTGCATTAATAGGAAACTGCCTAGACATACAGATAGATACACATAAATTGTTGATCATAGGAAAGAATCCCTAGCTCTCGCCTTCAGTTCACTGCTTTTTACATTTACAGGAAAACCTAATAATTACATACAATAATCTGTATCTAAAAAATTGTGGTGGCGTTGGAGGTGGTGGT...

CDS

1 records

下载 CDS FASTA

LOC131019711
ATGGCCACAGCTCCGAAAAAGGCGACGCTTACTGCTCCGAAGACGGCTGCCTGTTGCAGCGCTCCAGCCGGCATCGGCGATTCGGCCGCCGTAGTCCGCCGTGAGTCTGTATCCGCTACACCCGCTGCTGATTGGACAGTGTCTCCCGCCGCCGAGGATCAGAAGAAGAAGTCGGCCTCCTCCACCGTGGCGACCTTGATTAGACCGGAGCCTTCTTCCAATGCCACAGCTAAAGGGATCCAAGTTATGACAAGGGCTCA...

Protein

1 records

下载 Protein FASTA

XP_057804285.1
MATAPKKATLTAPKTAACCSAPAGIGDSAAVVRRESVSATPAADWTVSPAAEDQKKKSASSTVATLIRPEPSSNATAKGIQVMTRAQTKHPLDPLSATEISVAVATVRAAGTTPEVRDSMRFVEVVLLEPEKHVVALADAYFFPPFQPSLLARTKGGPSIPSKLPPRRARLVVYNKKSNETSLWIVELTEVHATTRGGHHRGKVVSSSIVPDVQPPMDATEYAECEAIVKDYPPFIEAMKKRGIHDMDLVMVDPWCVGYH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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