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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G001864

染色体: Chr04 坐标: 30389043-30391242 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G001864
名称SmilChr04G001864
描述pentatricopeptide repeat-containing protein At1g63330-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向30389043 - 30391242 / -

ID 对照

NCBI Gene IDLOC131019724
GeneID131019724
locus_tag-
NCBI NameLOC131019724
原始查询SmilChr04G001864

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g63330-like
产物pentatricopeptide repeat-containing protein At1g63330-like
ArabidopsisAT1G62670 (RPF2)
rna processing factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:842564]
identity=34.7; qcov=0.978; evalue=1.02e-132; confidence=low
RiceOs10g0495200 (Rf4)
-
identity=33.5; qcov=0.917; evalue=3.79e-109; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131019724

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057804298.1
2 Chloroplast 叶绿体 0.20000 XP_057804298.1
3 Nucleus 细胞核 0.00000 XP_057804298.1
4 Chromosome 染色体 0.00000 XP_057804298.1
5 Centromere 着丝粒 0.00000 XP_057804298.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:30389226 G A EMS_canonical_SNV CDS_variant 5 B6,C21,C54,C9,D1
Chr4:30389294 C T EMS_canonical_SNV CDS_variant 2 B75,B99
Chr4:30389413 C T EMS_canonical_SNV CDS_variant 1 D11
Chr4:30389429 A AC 1bp_insertion frameshift_variant 1 B63
Chr4:30389429 A AC 1bp_insertion CDS_variant 1 B63
Chr4:30389554 G A EMS_canonical_SNV CDS_variant 3 A20,B10,B63
Chr4:30389600 C T EMS_canonical_SNV CDS_variant 1 D11
Chr4:30389695 TG T 1bp_deletion frameshift_variant 1 B27
Chr4:30389695 TG T 1bp_deletion CDS_variant 1 B27
Chr4:30389774 C T EMS_canonical_SNV CDS_variant 1 B45
Chr4:30389779 C T EMS_canonical_SNV CDS_variant 2 B100,B140
Chr4:30389785 C T EMS_canonical_SNV CDS_variant 1 A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804298.1
639 aa
N
1
320
639
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_1
PPR_3
PPR_2
TPR_24
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR
PPR_3
TPR_24
PPR_1
PPR
PPR_2
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
C
PF13041 PPR_2 75-124 aa PF01535 PPR 114-142 aa PF13812 PPR_3 140-191 aa PF12854 PPR_1 141-171 aa PF13041 PPR_2 145-195 aa PF01535 PPR 148-172 aa PF12854 PPR_1 179-206 aa PF13041 PPR_2 181-232 aa PF01535 PPR 184-210 aa PF12854 PPR_1 216-244 aa PF13812 PPR_3 217-263 aa PF13041 PPR_2 218-267 aa PF23276 TPR_24 221-312 aa PF01535 PPR 222-251 aa PF12854 PPR_1 249-281 aa PF13041 PPR_2 253-281 aa PF01535 PPR 256-282 aa PF13812 PPR_3 278-335 aa PF12854 PPR_1 286-317 aa PF13041 PPR_2 289-336 aa PF01535 PPR 291-319 aa PF12854 PPR_1 321-348 aa PF13041 PPR_2 323-371 aa PF01535 PPR 326-356 aa PF13812 PPR_3 346-407 aa PF12854 PPR_1 355-380 aa PF13041 PPR_2 358-407 aa PF01535 PPR 361-390 aa PF12854 PPR_1 390-418 aa PF13041 PPR_2 393-437 aa PF01535 PPR 396-418 aa PF13812 PPR_3 423-472 aa PF13041 PPR_2 428-476 aa PF01535 PPR 431-460 aa PF13812 PPR_3 452-508 aa PF23276 TPR_24 454-529 aa PF12854 PPR_1 460-492 aa PF01535 PPR 467-496 aa PF13041 PPR_2 474-512 aa PF12854 PPR_1 494-525 aa PF01535 PPR 501-531 aa PF13041 PPR_2 506-546 aa PF13812 PPR_3 522-578 aa PF12854 PPR_1 529-562 aa PF01535 PPR 536-566 aa PF13041 PPR_2 540-582 aa PF13041 PPR_2 568-612 aa PF01535 PPR 571-601 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 75 124 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 114 142 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF13812 PPR_3 Repeat 140 191 1.5e-70 233.9 Pentatricopeptide repeat domain
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 141 171 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 145 195 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 148 172 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 179 206 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 181 232 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 184 210 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 216 244 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF13812 PPR_3 Repeat 217 263 1.5e-70 233.9 Pentatricopeptide repeat domain
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 218 267 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF23276 TPR_24 Repeat 221 312 2.5e-35 122.0 Pentatricopeptide repeat-containing protein
XP_057804298.1 Pfam PF01535 PPR Repeat 222 251 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 249 281 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 253 281 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 256 282 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF13812 PPR_3 Repeat 278 335 1.5e-70 233.9 Pentatricopeptide repeat domain
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 286 317 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 289 336 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 291 319 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 321 348 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 323 371 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 326 356 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF13812 PPR_3 Repeat 346 407 1.5e-70 233.9 Pentatricopeptide repeat domain
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 355 380 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 358 407 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 361 390 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 390 418 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 393 437 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 396 418 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF13812 PPR_3 Repeat 423 472 1.5e-70 233.9 Pentatricopeptide repeat domain
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 428 476 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 431 460 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF13812 PPR_3 Repeat 452 508 1.5e-70 233.9 Pentatricopeptide repeat domain
XP_057804298.1 Pfam PF23276 TPR_24 Repeat 454 529 2.5e-35 122.0 Pentatricopeptide repeat-containing protein
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 460 492 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF01535 PPR Repeat 467 496 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 474 512 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 494 525 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF01535 PPR Repeat 501 531 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 506 546 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF13812 PPR_3 Repeat 522 578 1.5e-70 233.9 Pentatricopeptide repeat domain
XP_057804298.1 Pfam PF12854 PPR_1 Repeat 529 562 6.2e-144 468.1 PPR repeat
XP_057804298.1 Pfam PF01535 PPR Repeat 536 566 9.5e-99 317.7 PPR repeat
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 540 582 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF13041 PPR_2 Repeat 568 612 7.7e-172 558.1 PPR repeat family
XP_057804298.1 Pfam PF01535 PPR Repeat 571 601 9.5e-99 317.7 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057948315.1
TAATCGGAATAACAAGTTCTACTTCGCCTTTCTTCACCAAAACCCTGTCTTTCCTTCTTCAGCTTTCACATCTGAAATTCTACAAAATTATCCCAACAATCAGGTCGAACCACGCCGCCATGTTTCTGGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGCACTTCTCCTCCTAT...

CDS

1 records

下载 CDS FASTA
LOC131019724
ATGTTTCTGGGTAGAATTTTGTCGAATTCTTCATCTAAATTCTCCACTTTTGCCATCGCTTCTCCACATTATCAATCATTTCTTGTACCCAGTTTTCATTTTGATAATGCCAGCTGCCAAATGAGGCACTTCTCCTCCTATCCCAGATTCGATTTTGAATCTATACGTGAGCCCAACGATTCCGTCGCTCTATTTCGGGATATGATGAGAACGGAGCCGCTTCCTTCTGTTAAGCTTTTCTCGAAATTGCTGAGCGTTGT...

Protein

1 records

下载 Protein FASTA
XP_057804298.1
MFLGRILSNSSSKFSTFAIASPHYQSFLVPSFHFDNASCQMRHFSSYPRFDFESIREPNDSVALFRDMMRTEPLPSVKLFSKLLSVVIKLKQYSAALHLFDKMLQREAPVNHYTLNIAIDCYCRLKKPDFGFAILGSFFKRGYEPDVVTFNTLIKGLLFVGRIPEAAKLLGKLSAYQLCEPDEYTYNTIINGLCKAGDILQAIDLLCSLEKGKGSCKPDVYAYNIVIDGLCKEGKVDEALQLFSTLGDNGISPDVVTYNS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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