Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001875`

染色体: Chr04 坐标: 30614225-30618085 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001875`
名称	SmilChr04G001875
描述	uncharacterized SmilChr04G001875
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	30614225 - 30618085 / `+`

ID 对照

NCBI Gene ID	`LOC131021074`
GeneID	`131021074`
locus_tag	`-`
NCBI Name	`LOC131021074`
原始查询	`SmilChr04G001875`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	D111/G-patch domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829562]; symbol=AT4G34140; hit=AT4G34140; species=arabidopsis; confidence=medium
产物	D111/G-patch domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829562]; symbol=AT4G34140; hit=AT4G34140; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G34140` (AT4G34140) D111/G-patch domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829562] identity=38.3; qcov=0.864; evalue=4.55e-54; confidence=medium
Rice	`Os01g0170100` - identity=49; qcov=0.283; evalue=2.18e-22; confidence=weak
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0005634 (nucleus)
KEGG	-
Pfam	PF01585 (G-patch); PF17780 (OCRE)
InterPro	-
eggNOG	-
NR	GeneID:131021074

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806138.1`
2	Nucleoplasm	核质	1.00000	`XP_057806146.1`
3	Cytoplasm	细胞质	0.80000	`XP_057806138.1`
4	Cytosol	细胞质基质	0.80000	`XP_057806144.1`
5	Nuclear body	核内小体	0.20000	`XP_057806146.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:30614595`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,C57
`Chr4:30615353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:30615355`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B23,C43
`Chr4:30616000`	`A`	`AT`	1bp_insertion	frameshift_variant	163	A13,A14,A15,A16,A19,A2,A20,A21,A22,A23,A3,A6,A7,A9,B10,B101,B104,B105,B106,B107,B11,B110,B112,B113,B114,B115,B118,B119,B12,B120,B121,B123,B125,B127,B128,B130,B131,B132,B134,B135,B136,B137,B139,B14,B140,B15,B17,B19,B20,B22,B23,B24,B26,B27,B29,B3,B31,B33,B36,B4,B40,B41,B44,B45,B47,B48,B49,B5,B50,B51,B55,B56,B57,B58,B59,B6,B62,B66,B67,B68,B69,B7,B73,B74,B75,B76,B78,B8,B80,B82,B85,B86,B88,B9,B90,B91,B92,B95,B96,B97,B98,C1,C10,C11,C12,C13,C15,C16,C17,C18,C19,C20,C21,C24,C25,C28,C3,C30,C35,C36,C37,C38,C4,C40,C41,C43,C44,C45,C48,C49,C50,C53,C54,C55,C56,C58,C59,C61,C63,C65,C66,C7,C71,C72,C74,C75,C76,C77,C78,C79,C80,C81,C83,C84,C86,D10,D2,D4,D5,D6,D7,D8,D9
`Chr4:30616004`	`T`	`TG`	1bp_insertion	frameshift_variant	105	A13,A15,A21,A23,A6,A9,B10,B101,B104,B107,B11,B110,B112,B113,B114,B118,B119,B125,B132,B134,B136,B139,B14,B17,B19,B20,B22,B23,B27,B29,B3,B31,B36,B4,B44,B45,B47,B48,B50,B56,B58,B59,B6,B62,B66,B67,B73,B74,B75,B76,B8,B82,B86,B88,B9,B91,B95,B96,B97,C1,C10,C11,C12,C16,C17,C18,C19,C20,C21,C24,C28,C3,C30,C33,C35,C36,C37,C38,C41,C43,C44,C45,C48,C49,C54,C55,C56,C59,C65,C66,C7,C71,C72,C74,C75,C76,C78,C79,C84,C86,D4,D6,D7,D8,D9
`Chr4:30616032`	`A`	`AT`	1bp_insertion	frameshift_variant	76	A18,A21,A22,A23,A4,B103,B104,B107,B108,B110,B113,B115,B117,B122,B123,B124,B127,B132,B135,B136,B139,B14,B22,B23,B24,B29,B3,B31,B36,B39,B44,B5,B58,B62,B65,B66,B67,B7,B74,B75,B76,B8,B86,B9,B90,B97,C1,C12,C20,C21,C23,C3,C30,C36,C40,C42,C44,C45,C48,C49,C51,C53,C55,C59,C63,C65,C7,C71,C75,C76,C79,C80,C86,D4,D6,D8
`Chr4:30616035`	`TC`	`T`	1bp_deletion	frameshift_variant	75	A18,A21,A22,A23,A4,B103,B104,B107,B108,B110,B113,B115,B117,B122,B123,B124,B127,B132,B135,B136,B139,B14,B22,B23,B24,B29,B3,B31,B36,B39,B44,B5,B58,B62,B65,B66,B67,B7,B74,B75,B76,B8,B86,B9,B97,C1,C12,C20,C21,C23,C3,C30,C36,C40,C42,C44,C45,C48,C49,C51,C53,C55,C59,C63,C65,C7,C71,C75,C76,C79,C80,C86,D4,D6,D8
`Chr4:30616066`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B118
`Chr4:30616066`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr4:30616100`	`GTC`	`G`	2bp_deletion	frameshift_variant	1	B86
`Chr4:30616100`	`GTC`	`G`	2bp_deletion	CDS_variant	1	B86
`Chr4:30616156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,B59,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806138.1

460 aa

230

460

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 414-453 aa

XP_057806139.1

449 aa

224

449

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 403-442 aa

XP_057806140.1

441 aa

220

441

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 395-434 aa

XP_057806141.1

430 aa

215

430

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 384-423 aa

XP_057806142.1

429 aa

214

429

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 383-422 aa

XP_057806143.1

418 aa

209

418

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 372-411 aa

XP_057806144.1

379 aa

190

379

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 333-372 aa

XP_057806146.1

368 aa

184

368

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 322-361 aa

XP_057806147.1

360 aa

180

360

OCRE

G-patch

PF17780 OCRE 12-51 aa PF01585 G-patch 314-353 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806138.1`	Pfam	`PF17780`	OCRE	Domain	12	51	6e-08	33.3	OCRE domain
`XP_057806138.1`	Pfam	`PF01585`	G-patch	Family	414	453	2.3e-09	37.7	G-patch domain
`XP_057806139.1`	Pfam	`PF17780`	OCRE	Domain	12	51	4.9e-08	33.6	OCRE domain
`XP_057806139.1`	Pfam	`PF01585`	G-patch	Family	403	442	2.2e-09	37.8	G-patch domain
`XP_057806140.1`	Pfam	`PF17780`	OCRE	Domain	12	51	5.5e-08	33.4	OCRE domain
`XP_057806140.1`	Pfam	`PF01585`	G-patch	Family	395	434	2.3e-09	37.8	G-patch domain
`XP_057806141.1`	Pfam	`PF17780`	OCRE	Domain	12	51	4.3e-08	33.8	OCRE domain
`XP_057806141.1`	Pfam	`PF01585`	G-patch	Family	384	423	2.2e-09	37.8	G-patch domain
`XP_057806142.1`	Pfam	`PF17780`	OCRE	Domain	12	51	5.8e-08	33.3	OCRE domain
`XP_057806142.1`	Pfam	`PF01585`	G-patch	Family	383	422	2.2e-09	37.8	G-patch domain
`XP_057806143.1`	Pfam	`PF17780`	OCRE	Domain	12	51	4.7e-08	33.6	OCRE domain
`XP_057806143.1`	Pfam	`PF01585`	G-patch	Family	372	411	2.1e-09	37.9	G-patch domain
`XP_057806144.1`	Pfam	`PF17780`	OCRE	Domain	12	51	3.9e-08	33.9	OCRE domain
`XP_057806144.1`	Pfam	`PF01585`	G-patch	Family	333	372	2e-09	37.9	G-patch domain
`XP_057806146.1`	Pfam	`PF17780`	OCRE	Domain	12	51	3.1e-08	34.2	OCRE domain
`XP_057806146.1`	Pfam	`PF01585`	G-patch	Family	322	361	1.9e-09	38.0	G-patch domain
`XP_057806147.1`	Pfam	`PF17780`	OCRE	Domain	12	51	3.4e-08	34.1	OCRE domain
`XP_057806147.1`	Pfam	`PF01585`	G-patch	Family	314	353	2e-09	38.0	G-patch domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

9 records

下载 cDNA FASTA

XM_057950163.1
ACAAAGATAAACTCAACGAACATCTATACATGTATATCGTATACTTACAATTGGAAAGAGGTGAAAAGCGAGGAAGCTGAATCATGGCGGGAGACGACGAACAGCCGGAAACTGACTCTGGTTTCCAGTGGGATGATAATTCTCAGCTTTATTATCACGCCAGAACTGGGTTTTACCATGACCCCCAAGCAGGATGGTATTACAATAGCAGAGATGGGCTTTATTACAAATTTGAAGATGGGAATTATGTGCTTCTCGAC...

XM_057950164.1
ACAAAGATAAACTCAACGAACATCTATACATGTATATCGTATACTTACAATTGGAAAGAGGTGAAAAGCGAGGAAGCTGAATCATGGCGGGAGACGACGAACAGCCGGAAACTGACTCTGGTTTCCAGTGGGATGATAATTCTCAGCTTTATTATCACGCCAGAACTGGGTTTTACCATGACCCCCAAGCAGGATGGTATTACAATAGCAGAGATGGGCTTTATTACAAATTTGAAGATGGGAATTATGTGCTTCTCGAC...

CDS

9 records

下载 CDS FASTA

LOC131021074
ATGGCGGGAGACGACGAACAGCCGGAAACTGACTCTGGTTTCCAGTGGGATGATAATTCTCAGCTTTATTATCACGCCAGAACTGGGTTTTACCATGACCCCCAAGCAGGATGGTATTACAATAGCAGAGATGGGCTTTATTACAAATTTGAAGATGGGAATTATGTGCTTCTCGACTCCAATCAGTCAGGGGATCAAGTGGAAATGCTTAACAGTAATAGCCAAGGTGAAACATCTGAGGCTTTAATGGAAGGAAAAGA...

Protein

9 records

下载 Protein FASTA

XP_057806138.1
MAGDDEQPETDSGFQWDDNSQLYYHARTGFYHDPQAGWYYNSRDGLYYKFEDGNYVLLDSNQSGDQVEMLNSNSQGETSEALMEGKEISINTSLDSSACNGSEESDYPPPPSEWLEDTLIDMFLSGYPSQAAHVSGSDTTMPVETYGINILNAPAYDAYDDIEELEEGEWIPDDPDFWRNFSDKIVDEGTSEEEENWRAQYGQVSRPDEEWMSGVQMVDLWDWALVRGTKKDGKSEVFRLVGRLRKPSSKLHPSVPSGGG...

XP_057806139.1
MAGDDEQPETDSGFQWDDNSQLYYHARTGFYHDPQAGWYYNSRDGLYYKFEDGNYVLLDSNQSGDQVEMLNSNSQGETSEALMEGKEISINTSLDSSACNGSEESDYPPPPSEWLEDTLIDMFLSGYPSQAAHVSGSDTTMPVETYAYDDIEELEEGEWIPDDPDFWRNFSDKIVDEGTSEEEENWRAQYGQVSRPDEEWMSGVQMVDLWDWALVRGTKKDGKSEVFRLVGRLRKPSSKLHPSVPSGGGILKTAPVCEAH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器