Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001903`

染色体: Chr04 坐标: 31101454-31103176 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001903`
名称	SmilChr04G001903
描述	plant UBX domain-containing protein 10-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	31101454 - 31103176 / `-`

ID 对照

NCBI Gene ID	`LOC131019892`
GeneID	`131019892`
locus_tag	`-`
NCBI Name	`LOC131019892`
原始查询	`SmilChr04G001903`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plant UBX domain-containing protein 10-like
产物	plant UBX domain-containing protein 10-like
Arabidopsis	`AT4G10790` (AT4G10790) UBX domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826675] identity=39.8; qcov=0.934; evalue=3.39e-52; confidence=medium
Rice	`Os09g0482000` - identity=43.4; qcov=0.785; evalue=3.11e-57; confidence=medium
GO	GO:0005783 (endoplasmic reticulum); GO:0030433 (GO:0030433); GO:0043130 (ubiquitin binding)
KEGG	-
Pfam	PF00789 (UBX); PF21021 (FAF1)
InterPro	-
eggNOG	-
NR	GeneID:131019892

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057804470.1`
2	Cytoplasm	细胞质	0.60000	`XP_057804470.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057804474.1`
4	Lipid droplet	脂滴	0.40000	`XP_057804473.1`
5	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057804471.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:31101673`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:31101723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr4:31101799`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B128
`Chr4:31102013`	`G`	`GGC`	2bp_insertion	frameshift_variant	9	B122,B22,B67,B95,C14,C24,C34,C73,C81
`Chr4:31102026`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B76,B94,C84
`Chr4:31102072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,D10,D11
`Chr4:31102146`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B46
`Chr4:31102146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr4:31102201`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B1,B40
`Chr4:31102428`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr4:31102735`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C53
`Chr4:31102735`	`AG`	`A`	1bp_deletion	CDS_variant	1	C53

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804470.1

350 aa

175

350

FAF1

UBX

PF21021 FAF1 67-138 aa PF00789 UBX 269-348 aa

XP_057804471.1

347 aa

174

347

FAF1

UBX

PF21021 FAF1 67-138 aa PF00789 UBX 266-345 aa

XP_057804473.1

291 aa

146

291

FAF1

PF21021 FAF1 67-138 aa

XP_057804474.1

288 aa

144

288

FAF1

PF21021 FAF1 67-138 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804470.1`	Pfam	`PF21021`	FAF1	Domain	67	138	7.2e-12	46.0	Fas-associated factor 1
`XP_057804470.1`	Pfam	`PF00789`	UBX	Domain	269	348	3e-21	76.1	UBX domain
`XP_057804471.1`	Pfam	`PF21021`	FAF1	Domain	67	138	7.1e-12	46.0	Fas-associated factor 1
`XP_057804471.1`	Pfam	`PF00789`	UBX	Domain	266	345	3e-21	76.1	UBX domain
`XP_057804473.1`	Pfam	`PF21021`	FAF1	Domain	67	138	4.8e-12	46.6	Fas-associated factor 1
`XP_057804474.1`	Pfam	`PF21021`	FAF1	Domain	67	138	4.7e-12	46.6	Fas-associated factor 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057948487.1
GAGGAAGGTATCTTGGTTTAAATCAGTGCAAGACAAGAGATAAAAGAGAGCACATATATATCTGAATTAATTCTCTCTTCACTTTGAAAAAGGAGGAGGACAAGTTCAAAAGTAGATTATGACACTTGTATAGTATGTCTTTGACTATGCTAAACCACTTCCACATTTACCTCATTACACAAAACATAGGATTCCTTCTCCTAGTTGAAGAAAACACAGTAGCTAAGTAAATTCGAAGACCTGCTGCATTTCTTGAGCAA...

XM_057948491.1
CATATATATCTGAATTAATTCTCTCTTCACTTTGAAAAAGGAGGAGGACAAGTTCAAAAGTAGATTATGACACTTGTATAGTATGTCTTTGACTATGCTAAACCACTTCCACATTTACCTCATTACACAAAACATAGGATTCCTTCTCCTAGTTGAAGAAAACACAGTAGCTAAGTAAATTCGAAGACCTGCTGCATTTCTTGAGCAAAAAAATGTCATCATCATCCATGAGGGAGATGGAGGCAGCGTGCAACGGGCTG...

CDS

4 records

下载 CDS FASTA

LOC131019892
ATGTCATCATCATCCATGAGGGAGATGGAGGCAGCGTGCAACGGGCTGGTTCGTAGAATGGTGAGCCTCCCTAGGAACATTCTAGGAGGCTTCTCAAGAGCCATGAACCAAGGCATTGACAGAATGTGGATTGGAGGAGGAAGAAGAAACCACCCAAACTTGCCACCCCCACCCCCCTTGCTTCAAGAGGAGTGGGCTTTCCTGTCCACCTTCGAGCAGCAGCACGGCCCCACGCACCCCTTCTTCTACGCGTGCCGTCT...

Protein

4 records

下载 Protein FASTA

XP_057804470.1
MSSSSMREMEAACNGLVRRMVSLPRNILGGFSRAMNQGIDRMWIGGGRRNHPNLPPPPPLLQEEWAFLSTFEQQHGPTHPFFYACRLMDALKIAKDEHKLMFMYIHSPDHPFTPNFCRETLCSELVVQFVDANFVSWGGISSRGEGLHMATTLKVSSFPFCAIVAPAPGDNLAVLQQMEGPVSPAELVEILQGTLEEQGLAFGSGARPNLEEKRRADRRLKEEQDAAYLAALTMDQERQRERERPSAQDRLPKSVIKQPN...

XP_057804471.1
MSSSSMREMEAACNGLVRRMVSLPRNILGGFSRAMNQGIDRMWIGGGRRNHPNLPPPPPLLQEEWAFLSTFEQQHGPTHPFFYACRLMDALKIAKDEHKLMFMYIHSPDHPFTPNFCRETLCSELVVQFVDANFVSWGGISSRGEGLHMATTLKVSSFPFCAIVAPAPGDNLAVLQQMEGPVSPAELVEILQGTLEEQGLAFGSGARPNLEEKRRADRRLKEEQDAAYLAALTMDQRERERPSAQDRLPKSVIKQPNKAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器