Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001937`

染色体: Chr04 坐标: 31494861-31497715 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001937`
名称	SmilChr04G001937
描述	uncharacterized SmilChr04G001937
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	31494861 - 31497715 / `+`

ID 对照

NCBI Gene ID	`LOC131019916`
GeneID	`131019916`
locus_tag	`-`
NCBI Name	`LOC131019916`
原始查询	`SmilChr04G001937`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:836420]; symbol=AT5G63000; hit=AT5G63000; species=arabidopsis; confidence=high
产物	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:836420]; symbol=AT5G63000; hit=AT5G63000; species=arabidopsis; confidence=high
Arabidopsis	`AT5G63000` (AT5G63000) Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:836420] identity=71.1; qcov=1; evalue=1.46e-100; confidence=high
Rice	`Os01g0271000` - identity=68.1; qcov=1.01; evalue=1.45e-82; confidence=high
GO	GO:0005739 (mitochondrion)
KEGG	-
Pfam	PF02466 (Tim17)
InterPro	-
eggNOG	-
NR	GeneID:131019916

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057804524.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057804524.1`
3	Mitochondrion inner membrane	线粒体内膜	0.20000	`XP_057804524.1`
4	Nucleus	细胞核	0.00000	`XP_057804524.1`
5	Chromosome	染色体	0.00000	`XP_057804524.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:31495195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr4:31495200`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A15,B120,C55
`Chr4:31495698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B134,B81,C6
`Chr4:31495706`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr4:31495729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,B47
`Chr4:31495761`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr4:31496506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:31496514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,C41,C42
`Chr4:31496519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr4:31496636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr4:31496637`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr4:31496684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B25,C41,C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804524.1

202 aa

101

202

Tim17

PF02466 Tim17 26-155 aa

XP_057804525.1

201 aa

100

201

Tim17

PF02466 Tim17 25-154 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804524.1`	Pfam	`PF02466`	Tim17	Family	26	155	8.2e-08	33.3	Tim17/Tim22/Tim23/Pmp24 family
`XP_057804525.1`	Pfam	`PF02466`	Tim17	Family	25	154	8.1e-08	33.3	Tim17/Tim22/Tim23/Pmp24 family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948542.1
CCATTTGCGCCATAACTTATTTTTTTATTTTGCGAAAATTAAAAGAGTAAGCCTGTATTTCTCGCTAACTAAAAAATTCACTCGCAATGTAATTTTAAATTATTTTTTTTCGAAATTATTTTTAAAATGAACATCCTTAAATTTAAAATTAATTTTCCAAACGGGTATACGGTATCTCAAGTATTTGTATAGGACTCACATCTCCAATTTTCCAAAAATTGCAAATAGAAATAAAATATGATTCTCACTAACTAAACTTT...

XM_057948541.1
AAGTATTTGTATAGGACTCACATCTCCAATTTTCCAAAAATTGCAAATAGAAATAAAATATGATTCTCACTAACTAAACTTTTAAAGATCGTATTTGGGGACAATTTATAGTCGAGGGTTTTAACGTTTCTGATTTCGATTCCTTCAGTGACAATGGAAGCGCCTGAGAATCAAGAAGAGATAGTCTCTGATCAGAGGACTGAAAAACTTGCTGGCACTGTCAACTGGGGTACTGCCACGGTCGTTGGTGTATTTGCCGG...

CDS

2 records

下载 CDS FASTA

LOC131019916
ATGGAAGCGCCTGAGAATCAAGAAGAGATAGTCTCTGATCAGAGGACTGAAAAACTTGCTGGCACTGTCAACTGGGGTACTGCCACGGTCGTTGGTGTATTTGCCGGCATGTTGTATGGAGGTAGCAAAGCGGCCTCTGCTTCTGTGAGCAAGGATGCAGAAGTAATGTTGAAGCTTGGGAGCACACCAGATAAGCGTGAACAGTATCGACTTATGAGGGATGCAATGGAGAAGAGATTTATTACAGTCACTCGTGGTTC...

LOC131019916
ATGGAAGCGCCTGAGAATCAAGAAGAGATAGTCTCTGATAGGACTGAAAAACTTGCTGGCACTGTCAACTGGGGTACTGCCACGGTCGTTGGTGTATTTGCCGGCATGTTGTATGGAGGTAGCAAAGCGGCCTCTGCTTCTGTGAGCAAGGATGCAGAAGTAATGTTGAAGCTTGGGAGCACACCAGATAAGCGTGAACAGTATCGACTTATGAGGGATGCAATGGAGAAGAGATTTATTACAGTCACTCGTGGTTCCAT...

Protein

2 records

下载 Protein FASTA

XP_057804524.1
MEAPENQEEIVSDQRTEKLAGTVNWGTATVVGVFAGMLYGGSKAASASVSKDAEVMLKLGSTPDKREQYRLMRDAMEKRFITVTRGSIVGGIRLGMFTAAFYGLQNLLAEKRGVIDVYNVVGAGSATASTFGLILPGSFRWRLRNALLGSVLGATICFPLGWLHLKLVAKANGGKLTTTNEEAKSGIAAAVERLEGNLKKRT

XP_057804525.1
MEAPENQEEIVSDRTEKLAGTVNWGTATVVGVFAGMLYGGSKAASASVSKDAEVMLKLGSTPDKREQYRLMRDAMEKRFITVTRGSIVGGIRLGMFTAAFYGLQNLLAEKRGVIDVYNVVGAGSATASTFGLILPGSFRWRLRNALLGSVLGATICFPLGWLHLKLVAKANGGKLTTTNEEAKSGIAAAVERLEGNLKKRT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器