当前解析结果
SmilChr04G001938| 统一新 Gene ID | SmilChr04G001938 |
|---|---|
| 名称 | SmilChr04G001938 |
| 描述 | uncharacterized SmilChr04G001938 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 31498037 - 31500220 / - |
| NCBI Gene ID | LOC131023289 |
|---|---|
| GeneID | 131023289 |
| locus_tag | - |
| NCBI Name | LOC131023289 |
| 原始查询 | SmilChr04G001938 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:834808]; symbol=ASG7; hit=AT5G47580; species=arabidopsis; confidence=medium |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:834808]; symbol=ASG7; hit=AT5G47580; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G47580 (ASG7)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:834808] identity=40.3; qcov=0.997; evalue=2.26e-172; confidence=medium |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023289 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057808819.1 |
| 2 | Nucleus membrane | 核膜 | 0.40000 | XP_057808819.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808819.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808819.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808819.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:31498046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C80 |
Chr4:31498058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B114,B25,C41,C84,D11 |
Chr4:31498068 |
C |
T |
EMS_canonical_SNV | stop_gained | 29 | A1,A22,A7,B100,B110,B131,B139,B17,B20,B23,B41,B47,B51,B58,B62,B7,B8,B80,B89,B97,C17,C3,C30,C34,C42,C5,C73,C76,D3 |
Chr4:31498121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,B126 |
Chr4:31498183 |
TC |
T |
1bp_deletion | frameshift_variant | 61 | A10,A21,A3,A5,A6,B1,B107,B108,B11,B112,B118,B12,B120,B122,B127,B129,B131,B134,B139,B19,B22,B24,B33,B4,B40,B42,B43,B48,B50,B52,B53,B55,B62,B65,B68,B71,B74,B78,B81,B98,C1,C10,C15,C19,C24,C27,C41,C45,C48,C50,C54,C57,C58,C62,C65,C72,C74,C9,D4,D8,D9 |
Chr4:31498232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,B46,C24 |
Chr4:31498313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr4:31498367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B13,B35 |
Chr4:31498377 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B110,C84 |
Chr4:31498377 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B110,C84 |
Chr4:31498450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr4:31498469 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A9,B37,B9,C26 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。