当前解析结果
SmilChr04G001943| 统一新 Gene ID | SmilChr04G001943 |
|---|---|
| 名称 | SmilChr04G001943 |
| 描述 | uncharacterized SmilChr04G001943 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 31538213 - 31540094 / - |
| NCBI Gene ID | LOC131019917 |
|---|---|
| GeneID | 131019917 |
| locus_tag | - |
| NCBI Name | LOC131019917 |
| 原始查询 | SmilChr04G001943 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831835]; symbol=AT5G03450; hit=AT5G03450; species=arabidopsis; confidence=low |
| 产物 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831835]; symbol=AT5G03450; hit=AT5G03450; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G03450 (AT5G03450)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831835] identity=34.8; qcov=0.473; evalue=1.11e-09; confidence=low |
| Rice | Os03g0108200- identity=34.4; qcov=0.324; evalue=1.54e-06; confidence=low |
| GO | GO:0005634 (nucleus); GO:0016567 (protein ubiquitination); GO:0036297 (interstrand cross-link repair); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF13639 (zf-RING_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019917 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057804526.1 |
| 2 | Nucleoplasm | 核质 | 0.60000 | XP_057804526.1 |
| 3 | Nuclear body | 核内小体 | 0.40000 | XP_057804526.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057804526.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057804526.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:31538628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B96 |
Chr4:31538658 |
GC |
G |
1bp_deletion | frameshift_variant | 4 | A4,B36,B47,B49 |
Chr4:31538658 |
GC |
G |
1bp_deletion | CDS_variant | 4 | A4,B36,B47,B49 |
Chr4:31538661 |
G |
GT |
1bp_insertion | frameshift_variant | 4 | A4,B36,B47,B49 |
Chr4:31538661 |
G |
GT |
1bp_insertion | CDS_variant | 4 | A4,B36,B47,B49 |
Chr4:31538666 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B36,B47,B49 |
Chr4:31538787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr4:31539093 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | A6,B120,B125,B132,C79 |
Chr4:31539093 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B120,B125,B132,C79 |
Chr4:31539098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B120,B125 |
Chr4:31539099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B29,B82 |
Chr4:31539745 |
G |
GAT |
2bp_insertion | frameshift_variant | 71 | A10,A11,A14,A21,A6,B10,B101,B106,B107,B11,B112,B113,B117,B127,B129,B13,B130,B134,B135,B137,B139,B15,B17,B20,B24,B26,B28,B29,B3,B34,B35,B40,B44,B45,B5,B52,B53,B56,B6,B64,B7,B8,B80,B83,B87,B92,B96,B99,C11,C12,C18,C20,C23,C24,C26,C29,C38,C40,C44,C56,C58,C62,C69,C77,C78,C81,C84,D1,D11,D2,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804526.1PF13639
zf-RING_2 69-115 aa
PF00097
zf-C3HC4 70-114 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804526.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 69 | 115 | 3.1e-07 | 31.3 | Ring finger domain |
XP_057804526.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 70 | 114 | 4e-06 | 27.3 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。