当前解析结果
SmilChr04G001945| 统一新 Gene ID | SmilChr04G001945 |
|---|---|
| 名称 | SmilChr04G001945 |
| 描述 | uncharacterized SmilChr04G001945 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 31574533 - 31576376 / + |
| NCBI Gene ID | LOC131023294 |
|---|---|
| GeneID | 131023294 |
| locus_tag | - |
| NCBI Name | LOC131023294 |
| 原始查询 | SmilChr04G001945 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827439]; symbol=AT4G17250; hit=AT4G17250; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827439]; symbol=AT4G17250; hit=AT4G17250; species=arabidopsis; confidence=low |
| Arabidopsis | AT4G17250 (AT4G17250)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:827439] identity=31; qcov=1.1; evalue=6.7e-84; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023294 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus membrane | 核膜 | 0.40000 | XP_057808823.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057808823.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057808823.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057808823.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057808823.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:31574556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,C54 |
Chr4:31574565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B106,C54 |
Chr4:31574653 |
C |
T |
EMS_canonical_SNV | stop_gained | 30 | A1,A15,A23,A6,B105,B108,B122,B138,B17,B22,B25,B27,B33,B58,B6,B62,B69,B84,B9,C14,C16,C43,C45,C47,C62,C63,C85,D2,D3,D5 |
Chr4:31574713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B119,B23,C43 |
Chr4:31574857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr4:31574878 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | D7 |
Chr4:31574878 |
G |
GA |
1bp_insertion | CDS_variant | 1 | D7 |
Chr4:31574899 |
G |
GT |
1bp_insertion | frameshift_variant | 21 | A1,A23,A6,B105,B108,B122,B138,B17,B22,B25,B27,B33,B9,C14,C16,C45,C47,C62,C63,C85,D3 |
Chr4:31575011 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr4:31575018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr4:31575051 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,C54,C86 |
Chr4:31575066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。