当前解析结果
SmilChr04G001954| 统一新 Gene ID | SmilChr04G001954 |
|---|---|
| 名称 | SmilChr04G001954 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 31730169 - 31732306 / + |
| NCBI Gene ID | LOC131023300 |
|---|---|
| GeneID | 131023300 |
| locus_tag | - |
| NCBI Name | LOC131023300 |
| 原始查询 | SmilChr04G001954 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=32.1; qcov=0.734; evalue=5.69e-57; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=28; qcov=0.85; evalue=2.2e-57; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023300 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057808830.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057808830.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057808830.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057808830.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057808830.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:31730171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,D7 |
Chr4:31730189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:31730281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B95,C81 |
Chr4:31730365 |
ATC |
A |
2bp_deletion | frameshift_variant | 49 | A1,A15,A23,A6,B10,B100,B105,B108,B119,B122,B132,B134,B138,B17,B22,B25,B27,B33,B56,B58,B6,B62,B68,B69,B81,B84,B9,B95,B96,C1,C11,C14,C16,C2,C23,C43,C45,C47,C6,C62,C63,C69,C81,C85,C9,D2,D3,D5,D6 |
Chr4:31730369 |
G |
GAC |
2bp_insertion | frameshift_variant | 49 | A1,A15,A23,A6,B10,B100,B105,B108,B119,B122,B132,B134,B138,B17,B22,B25,B27,B33,B56,B58,B6,B62,B68,B69,B81,B84,B9,B95,B96,C1,C11,C14,C16,C2,C23,C43,C45,C47,C6,C62,C63,C69,C81,C85,C9,D2,D3,D5,D6 |
Chr4:31730404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B103,B114,B91,C48,C57 |
Chr4:31730445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B42 |
Chr4:31730491 |
C |
CA |
1bp_insertion | frameshift_variant | 1 | B104 |
Chr4:31730491 |
C |
CA |
1bp_insertion | CDS_variant | 1 | B104 |
Chr4:31730552 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C1,C23 |
Chr4:31730579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B65 |
Chr4:31730590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808830.1PF00931
NB-ARC 164-275 aa
PF23559
WHD_DRP 387-456 aa
PF23598
LRR_14 506-684 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808830.1 |
Pfam | PF00931 |
NB-ARC | Domain | 164 | 275 | 2.1e-28 | 99.8 | NB-ARC domain |
XP_057808830.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 387 | 456 | 1.3e-17 | 64.3 | Disease resistance protein Winged helix domain |
XP_057808830.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 506 | 684 | 1.2e-12 | 48.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。