当前解析结果
SmilChr04G001956| 统一新 Gene ID | SmilChr04G001956 |
|---|---|
| 名称 | SmilChr04G001956 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 31744718 - 31748661 / - |
| NCBI Gene ID | LOC131019931 |
|---|---|
| GeneID | 131019931 |
| locus_tag | - |
| NCBI Name | LOC131019931 |
| 原始查询 | SmilChr04G001956 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.5; qcov=0.671; evalue=7.02e-71; confidence=low |
| Rice | Os07g0186500- identity=32; qcov=0.613; evalue=5.86e-70; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019931 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057804535.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057804535.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057804535.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057804535.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057804535.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:31745437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:31745561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,B133,B94 |
Chr4:31745675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C67,C9,D7 |
Chr4:31745739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:31745799 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr4:31745918 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C73 |
Chr4:31745918 |
G |
GA |
1bp_insertion | CDS_variant | 1 | C73 |
Chr4:31746035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B26,B35,B41,C1,C23 |
Chr4:31746172 |
G |
A |
EMS_canonical_SNV | stop_gained | 24 | A22,A23,A8,B107,B115,B121,B129,B131,B14,B15,B63,B78,B81,B89,C26,C33,C34,C37,C59,C71,C79,C84,C85,C87 |
Chr4:31746404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:31746416 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,D7 |
Chr4:31746580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057804535.1PF00931
NB-ARC 407-577 aa
PF23559
WHD_DRP 662-730 aa
PF23598
LRR_14 784-1088 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804535.1 |
Pfam | PF00931 |
NB-ARC | Domain | 407 | 577 | 1e-44 | 152.9 | NB-ARC domain |
XP_057804535.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 662 | 730 | 4.2e-17 | 62.7 | Disease resistance protein Winged helix domain |
XP_057804535.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 784 | 1088 | 3.6e-21 | 76.0 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。