Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr04G001971`

Chromosome: Chr04 Coordinates: 31925539-31927847 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr04G001971`
Name	SmilChr04G001971
Description	GDSL esterase/lipase At5g62930
Chromosome / SeqID	Chr04 / NC_080390.1
Coordinates and Strand	31925539 - 31927847 / `-`

ID Mapping

NCBI Gene ID	`LOC131019941`
GeneID	`131019941`
locus_tag	`-`
NCBI Name	`LOC131019941`
Original query	`SmilChr04G001971`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	GDSL esterase/lipase At5g62930
Product	GDSL esterase/lipase At5g62930
Arabidopsis	`AT5G62930` (AT5G62930) SGNH hydrolase-type esterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836413] identity=66.7; qcov=0.988; evalue=1.46e-118; confidence=high
Rice	`Os10g0476700` (OsGELP109) - identity=64.7; qcov=0.979; evalue=1.86e-115; confidence=high
GO	GO:0016788 (hydrolase activity, acting on ester bonds)
KEGG	-
Pfam	PF00657 (Lipase_GDSL); PF13472 (Lipase_GDSL_2)
InterPro	-
eggNOG	-
NR	GeneID:131019941

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057804549.1`
2	Cytoplasm	细胞质	0.80000	`XP_057804549.1`
3	Nucleus	细胞核	0.00000	`XP_057804549.1`
4	Chromosome	染色体	0.00000	`XP_057804549.1`
5	Centromere	着丝粒	0.00000	`XP_057804549.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr4:31925673`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B131
`Chr4:31925673`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B131
`Chr4:31925683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B123,B14,B91
`Chr4:31925692`	`T`	`TGA`	2bp_insertion	frameshift_variant	19	A10,B101,B126,B133,B24,B37,B63,B85,B87,B94,B98,B99,C17,C44,C59,C80,C84,D11,D6
`Chr4:31926132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:31926647`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr4:31926718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057804549.1

243 aa

122

243

Lipase_GDSL

Lipase_GDSL_2

PF00657 Lipase_GDSL 5-202 aa PF13472 Lipase_GDSL_2 7-199 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057804549.1`	Pfam	`PF00657`	Lipase_GDSL	Family	5	202	7.8e-32	111.8	GDSL-like Lipase/Acylhydrolase
`XP_057804549.1`	Pfam	`PF13472`	Lipase_GDSL_2	Domain	7	199	1e-25	92.0	GDSL-like Lipase/Acylhydrolase family

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057948566.1
TTTTTTTGGAGAACGCCACACGAGATTTTCACTGAAAGAATGAAAGAAAAAGAATAATTATTGTAATACTAAAAAATTCAATTGGTTGAAGAACTTTAACCGTCACGACTCACATATAGCGCAGTTTGCATAACTTAACCGCGGCGGGGAAGAGAACTGAGAATGAGGCCTCAAATAGTGTTGTTTGGAGACTCCATAACGCAGCAATCTTTCAGATCGGGGGGTTGGGGCGCTTCTGTAGCTGACACATACTCAAGAAA...

CDS

1 records

Download CDS FASTA

LOC131019941
ATGAGGCCTCAAATAGTGTTGTTTGGAGACTCCATAACGCAGCAATCTTTCAGATCGGGGGGTTGGGGCGCTTCTGTAGCTGACACATACTCAAGAAAGGTTGATGTAGTGCTTCGTGGGTATGGCGGCTACAACACTAGGTGGGCTCTCTTCTTGTTGCATCACCTATTCCCTCCGGTATCTGAAGCACCTTCTCCTGCTGCTGTTACCATATTTTTTGGGGCTAATGATGCTGCTCTTTTGGAGGGCACTGGCAAAAG...

Protein

1 records

Download Protein FASTA

XP_057804549.1
MRPQIVLFGDSITQQSFRSGGWGASVADTYSRKVDVVLRGYGGYNTRWALFLLHHLFPPVSEAPSPAAVTIFFGANDAALLEGTGKRQHVPLEEYKENLRKMVQHIKNHSPKTLVVLITPPPIDLEGRQEYARSMYGDKASKVADRTNEVAGTYADQCVALAKELCLPSINLWSKMQETNGWQRRFLSDGLHLTPEGNAVVFGELVKILDEAGFSALPYDFPLHSEIDEENPASSFSQDRATV

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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