Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G001973`

染色体: Chr04 坐标: 31957767-31962991 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G001973`
名称	SmilChr04G001973
描述	boron transporter 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	31957767 - 31962991 / `-`

ID 对照

NCBI Gene ID	`LOC131019942`
GeneID	`131019942`
locus_tag	`-`
NCBI Name	`LOC131019942`
原始查询	`SmilChr04G001973`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	boron transporter 1-like
产物	boron transporter 1-like
Arabidopsis	`AT2G47160` (BOR1) HCO3- transporter family [Source:NCBI gene (formerly Entrezgene);Acc:819329] identity=80.4; qcov=0.975; evalue=0; confidence=high
Rice	`Os12g0566000` (BOR1) - identity=83.3; qcov=0.975; evalue=0; confidence=high
GO	GO:0005452 (solute:inorganic anion antiporter activity); GO:0005886 (plasma membrane); GO:0006820 (monoatomic anion transport); GO:0050801 (monoatomic ion homeostasis); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00955 (HCO3_cotransp)
InterPro	-
eggNOG	-
NR	GeneID:131019942

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057804551.1`
2	Vacuole membrane	液泡膜	0.80000	`XP_057804550.1`
3	Vacuole	液泡	0.40000	`XP_057804550.1`
4	Nucleus	细胞核	0.00000	`XP_057804550.1`
5	Chromosome	染色体	0.00000	`XP_057804550.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:31957967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B118,B65
`Chr4:31957968`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,C48
`Chr4:31958048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C14,C35
`Chr4:31958070`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,C43
`Chr4:31958122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B34,C7,C81
`Chr4:31958533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr4:31958539`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr4:31958611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B34,C7,C81
`Chr4:31958640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B5,C83
`Chr4:31958674`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,D10,D11
`Chr4:31958857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:31959055`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804550.1

712 aa

356

712

HCO3_cotransp

PF00955 HCO3_cotransp 7-179 aa PF00955 HCO3_cotransp 202-372 aa PF00955 HCO3_cotransp 460-602 aa

XP_057804551.1

633 aa

316

633

HCO3_cotransp

PF00955 HCO3_cotransp 7-179 aa PF00955 HCO3_cotransp 202-372 aa PF00955 HCO3_cotransp 460-602 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804550.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	7	179	1.8e-89	301.7	HCO3- transporter integral membrane domain
`XP_057804550.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	202	372	1.8e-89	301.7	HCO3- transporter integral membrane domain
`XP_057804550.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	460	602	1.8e-89	301.7	HCO3- transporter integral membrane domain
`XP_057804551.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	7	179	9.5e-90	302.6	HCO3- transporter integral membrane domain
`XP_057804551.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	202	372	9.5e-90	302.6	HCO3- transporter integral membrane domain
`XP_057804551.1`	Pfam	`PF00955`	HCO3_cotransp	Domain	460	602	9.5e-90	302.6	HCO3- transporter integral membrane domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948567.1
GGCACACCAAAAGAGGAAAAAAGGGCAAAGGAGAGTTTGCGGTCTTCTTGGACCGCTGCATCTCCATCCATGGCTGATTCTCTGAATCAAACATGTATATTCTGTGTCGTAGACCAATACAAGCCCAGCAAAATACGATAATTTATGTTTTCTTTTTCACAAGCAATTTTTCATGAATAATAGTAACTTTTAAATCTTCAATTTAATTAATTTTTTTTTTCTTGCATGCTTTCGGGTCTGAGAAACAGTTATTTATGCTT...

XM_057948568.1
GGCAAAGGAGAGTTTGCGGTCTTCTTGGACCGCTGCATCTCCATCCATGGCTGATTCTCTGAATCAAACATGTATATTCTGTGTCGTAGACCAATACAAGCCCAGCAAAATACGATAATTTATGTTTTCTTTTTCACAAGCAATTTTTCATGAATAATAGTAACTTTTAAATCTTCAATTTAATTAATTTTTTTTTTCTTGCATGCTTTCGGGTCTGAGAAACAGTTATTTATGCTTACTCACCGCACACTATCTCTGCT...

CDS

2 records

下载 CDS FASTA

LOC131019942
ATGGAGGAAACGTTTGTTCCCTTTCGTGGGATTAAGAATGATCTCAAAGGAAGGCTTCTGTGCTACAAACAAGATTGGAGCAGCGGGATAGGCGCAGGTATCAGGATCTTGGCTCCAACAACATATATATTCTTTGCTTCCGCAATTCCTGTTATATCTTTCGGTGTGCAGCTGGAGAGAAACACTAATGGAACTTTAACAGCAGTGCAAACACTTGCATCAACTGCAATTTGTGGTGTGATCCACTCTGTCATAGGTGG...

Protein

2 records

下载 Protein FASTA

XP_057804550.1
MEETFVPFRGIKNDLKGRLLCYKQDWSSGIGAGIRILAPTTYIFFASAIPVISFGVQLERNTNGTLTAVQTLASTAICGVIHSVIGGQPLLILGVAEPTVLMYTFMFDFAKDRKDLGEKLFLAWTAWVCVWTSILLFLLAILGACSIINRFTRVAGELFGLLIAMLFMQQAIRGVVEEFGIPKRGNESATALLPSWRFGNGMFALVLSFGLLLTALRSRKARSWRYGAGWLRGFIADYGVPLMVLVWTGVSYIPANDVPK...

XP_057804551.1
MEETFVPFRGIKNDLKGRLLCYKQDWSSGIGAGIRILAPTTYIFFASAIPVISFGVQLERNTNGTLTAVQTLASTAICGVIHSVIGGQPLLILGVAEPTVLMYTFMFDFAKDRKDLGEKLFLAWTAWVCVWTSILLFLLAILGACSIINRFTRVAGELFGLLIAMLFMQQAIRGVVEEFGIPKRGNESATALLPSWRFGNGMFALVLSFGLLLTALRSRKARSWRYGAGWLRGFIADYGVPLMVLVWTGVSYIPANDVPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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