当前解析结果
SmilChr04G001989| 统一新 Gene ID | SmilChr04G001989 |
|---|---|
| 名称 | SmilChr04G001989 |
| 描述 | serine/threonine-protein kinase ATM |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 32189139 - 32202262 / + |
| NCBI Gene ID | LOC131023312 |
|---|---|
| GeneID | 131023312 |
| locus_tag | - |
| NCBI Name | LOC131023312 |
| 原始查询 | SmilChr04G001989 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase ATM |
| 产物 | serine/threonine-protein kinase ATM |
| Arabidopsis | AT3G48190 (ATM)Serine/Threonine-kinase ATM-like protein [Source:NCBI gene (formerly Entrezgene);Acc:823975] identity=70.8; qcov=0.68; evalue=0; confidence=high |
| Rice | Os01g0106700- identity=69; qcov=0.685; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0004674 (protein serine/threonine kinase activity); GO:0006281 (DNA repair); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF00454 (PI3_PI4_kinase); PF02260 (FATC); PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical); PF27041 (ZBED1_RNase-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023312 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808840.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057808840.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057808840.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808840.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808840.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:32189699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:32189804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B9 |
Chr4:32189923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C11 |
Chr4:32189934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr4:32190028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr4:32190111 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr4:32191060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr4:32191599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B40,C32,C68 |
Chr4:32194005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:32194060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B125,B38,B39,C13,C41 |
Chr4:32194206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,D7 |
Chr4:32194537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808840.1PF27041
ZBED1_RNase-like 1-83 aa
PF27039
ZBED1_RNase-like_helical 87-196 aa
PF14372
hAT-like_RNase-H 216-313 aa
PF05699
Dimer_Tnp_hAT 375-429 aa
PF00454
PI3_PI4_kinase 993-1234 aa
PF02260
FATC 1290-1319 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808840.1 |
Pfam | PF27041 |
ZBED1_RNase-like | Domain | 1 | 83 | 2.3e-24 | 86.1 | ZBED1 RNase-like domain |
XP_057808840.1 |
Pfam | PF27039 |
ZBED1_RNase-like_helical | Domain | 87 | 196 | 1.6e-36 | 125.5 | ZBED1 RNase-like helical domain |
XP_057808840.1 |
Pfam | PF14372 |
hAT-like_RNase-H | Domain | 216 | 313 | 2.7e-20 | 73.1 | hAT-like transposase, RNase-H fold |
XP_057808840.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 375 | 429 | 6.5e-16 | 58.6 | hAT family C-terminal dimerisation region |
XP_057808840.1 |
Pfam | PF00454 |
PI3_PI4_kinase | Family | 993 | 1234 | 5.1e-56 | 191.0 | Phosphatidylinositol 3- and 4-kinase |
XP_057808840.1 |
Pfam | PF02260 |
FATC | Family | 1290 | 1319 | 3.7e-12 | 46.4 | FATC domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。