Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002007

染色体: Chr04 坐标: 32551036-32554788 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002007
名称SmilChr04G002007
描述serine/threonine-protein kinase STY13-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向32551036 - 32554788 / +

ID 对照

NCBI Gene IDLOC131021178
GeneID131021178
locus_tag-
NCBI NameLOC131021178
原始查询SmilChr04G002007

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述serine/threonine-protein kinase STY13-like
产物serine/threonine-protein kinase STY13-like
ArabidopsisAT5G50000 (AT5G50000)
Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835064]
identity=82.3; qcov=1.02; evalue=0; confidence=high
RiceOs05g0577700
-
identity=80.8; qcov=0.989; evalue=0; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like); PF17667 (Pkinase_fungal)
InterPro-
eggNOG-
NRGeneID:131021178

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057806253.1
2 Cell membrane 细胞膜 1.00000 XP_057806253.1
3 Cytoplasm 细胞质 0.60000 XP_057806253.1
4 Nucleus 细胞核 0.00000 XP_057806253.1
5 Chromosome 染色体 0.00000 XP_057806253.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:32551650 G A EMS_canonical_SNV CDS_variant 1 D7
Chr4:32551691 C T EMS_canonical_SNV CDS_variant 2 B138,C47
Chr4:32553357 G A EMS_canonical_SNV CDS_variant 4 B130,B87,C78,D9
Chr4:32553633 C T EMS_canonical_SNV CDS_variant 5 B14,B15,B36,C33,C71
Chr4:32553708 G A EMS_canonical_SNV CDS_variant 3 B71,B93,C62
Chr4:32553732 C T EMS_canonical_SNV CDS_variant 1 B41
Chr4:32554278 G A EMS_canonical_SNV CDS_variant 4 B125,B90,B92,C87
Chr4:32554281 C T EMS_canonical_SNV CDS_variant 4 B125,B90,B92,C87
Chr4:32554443 G A EMS_canonical_SNV CDS_variant 1 C81
Chr4:32554569 C T EMS_canonical_SNV CDS_variant 4 B125,B90,B92,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057806253.1
379 aa
N
1
190
379
PK_Tyr_Ser-Thr
Pkinase
Kinase-like
Pkinase_fungal
C
PF07714 PK_Tyr_Ser-Thr 78-348 aa PF00069 Pkinase 79-348 aa PF14531 Kinase-like 188-296 aa PF17667 Pkinase_fungal 207-282 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806253.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 78 348 2.2e-62 211.4 Protein tyrosine and serine/threonine kinase
XP_057806253.1 Pfam PF00069 Pkinase Domain 79 348 7.1e-50 170.6 Protein kinase domain
XP_057806253.1 Pfam PF14531 Kinase-like Family 188 296 5.8e-06 26.5 Kinase-like
XP_057806253.1 Pfam PF17667 Pkinase_fungal Domain 207 282 5e-08 32.8 Fungal protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057950270.1
AGCCAAGTTCACTGTCATGTGTGAGTAGAGATCTCGTTTGCTGAATCTTGCAAGAGATCATAAGAAATTAAATGTGAATTAAAGTCGTAATATTTTTGTGGGAGAAAAAAGAAAGAAAGAAAAGGAAATGGAAGAACATAAATGGATTGTACCAACAAGTAGGATTTGAATGAGAAAAAACAGAAGGCTATGTGGGTCACATACACACGTTGTCTTCAGGCAATTCCATGTGCCCACATGGCGCTGCTCTCTCATCATTC...

CDS

1 records

下载 CDS FASTA
LOC131021178
ATGGAGAAGAGCAGCAATGGGTTCGTGAGGGCAGATCAGATAGATTTGAAGAGCTTGGATGAGCAGCTCGAGAGGCATTTGAATAGGGCTTTGACTCTTGAGAAGAACAGGAAGAGTCAAGACGCCGACTTCTCCCACTCCTCCGCCCTCCCCGCCTTCTCCGCCGCCGCCGCCGCCGCCGTCGCCAGGCGCCCGAGGCAGGAGTGGGAGATTGACCCTTCTAAGCTGATCATCAAGAGCGTCCTCGCACGTGGCACCTT...

Protein

1 records

下载 Protein FASTA
XP_057806253.1
MEKSSNGFVRADQIDLKSLDEQLERHLNRALTLEKNRKSQDADFSHSSALPAFSAAAAAAVARRPRQEWEIDPSKLIIKSVLARGTFGTVHRGVYDGQDVAVKLLDWGEEGHRTEAEIQSLRSAFTQEVAVWHKLDHPNVTKFIGATMGSSGLNIQTENGHIGMPSNICCVVVEYLPGGALKSYLIKNRRKKLAFKVVVHMALDLARGLSYLHSQKIVHRDVKTENMLLDKSRTVKIADFGVARVEASNPNDMTGETGTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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