当前解析结果
SmilChr04G002007| 统一新 Gene ID | SmilChr04G002007 |
|---|---|
| 名称 | SmilChr04G002007 |
| 描述 | serine/threonine-protein kinase STY13-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 32551036 - 32554788 / + |
| NCBI Gene ID | LOC131021178 |
|---|---|
| GeneID | 131021178 |
| locus_tag | - |
| NCBI Name | LOC131021178 |
| 原始查询 | SmilChr04G002007 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase STY13-like |
| 产物 | serine/threonine-protein kinase STY13-like |
| Arabidopsis | AT5G50000 (AT5G50000)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835064] identity=82.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os05g0577700- identity=80.8; qcov=0.989; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like); PF17667 (Pkinase_fungal) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021178 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057806253.1 |
| 2 | Cell membrane | 细胞膜 | 1.00000 | XP_057806253.1 |
| 3 | Cytoplasm | 细胞质 | 0.60000 | XP_057806253.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057806253.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057806253.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:32551650 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr4:32551691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B138,C47 |
Chr4:32553357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B130,B87,C78,D9 |
Chr4:32553633 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B14,B15,B36,C33,C71 |
Chr4:32553708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B71,B93,C62 |
Chr4:32553732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr4:32554278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:32554281 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:32554443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr4:32554569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057806253.1PF07714
PK_Tyr_Ser-Thr 78-348 aa
PF00069
Pkinase 79-348 aa
PF14531
Kinase-like 188-296 aa
PF17667
Pkinase_fungal 207-282 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806253.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 78 | 348 | 2.2e-62 | 211.4 | Protein tyrosine and serine/threonine kinase |
XP_057806253.1 |
Pfam | PF00069 |
Pkinase | Domain | 79 | 348 | 7.1e-50 | 170.6 | Protein kinase domain |
XP_057806253.1 |
Pfam | PF14531 |
Kinase-like | Family | 188 | 296 | 5.8e-06 | 26.5 | Kinase-like |
XP_057806253.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 207 | 282 | 5e-08 | 32.8 | Fungal protein kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。