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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002029

染色体: Chr04 坐标: 32992541-32995303 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002029
名称SmilChr04G002029
描述pentatricopeptide repeat-containing protein At5g66520-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向32992541 - 32995303 / -

ID 对照

NCBI Gene IDLOC131021200
GeneID131021200
locus_tag-
NCBI NameLOC131021200
原始查询SmilChr04G002029

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g66520-like
产物pentatricopeptide repeat-containing protein At5g66520-like
ArabidopsisAT5G66520 (AT5G66520)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836784]
identity=40.7; qcov=0.979; evalue=9.07e-154; confidence=medium
RiceOs07g0113500 (OJ1513_F02.122)
-
identity=42.4; qcov=0.903; evalue=9.24e-146; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131021200

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057806282.1
2 Chloroplast 叶绿体 0.20000 XP_057806282.1
3 Nucleus 细胞核 0.00000 XP_057806282.1
4 Chromosome 染色体 0.00000 XP_057806282.1
5 Centromere 着丝粒 0.00000 XP_057806282.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:32993389 G A EMS_canonical_SNV CDS_variant 4 B125,B90,B92,C87
Chr4:32993393 C T EMS_canonical_SNV CDS_variant 4 B38,B39,B85,C13
Chr4:32993398 G A EMS_canonical_SNV CDS_variant 4 B38,B39,B85,C13
Chr4:32993505 G A EMS_canonical_SNV CDS_variant 1 C9
Chr4:32993506 C T EMS_canonical_SNV CDS_variant 4 B100,B6,C63,C81
Chr4:32993586 C T EMS_canonical_SNV stop_gained 1 B114
Chr4:32993586 C T EMS_canonical_SNV CDS_variant 1 B114
Chr4:32993675 TGC T 2bp_deletion frameshift_variant 1 B74
Chr4:32993675 TGC T 2bp_deletion CDS_variant 1 B74
Chr4:32993813 C T EMS_canonical_SNV CDS_variant 4 B38,B39,B85,C13
Chr4:32993857 G A EMS_canonical_SNV CDS_variant 3 B103,B91,C85
Chr4:32993976 C T EMS_canonical_SNV CDS_variant 5 B134,B47,B58,B66,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806282.1
617 aa
N
1
308
617
PPR_2
PPR
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
E_motif
DYW_deaminase
C
PF13041 PPR_2 79-125 aa PF01535 PPR 81-105 aa PF01535 PPR 152-176 aa PF01535 PPR 180-207 aa PF01535 PPR 211-238 aa PF01535 PPR 283-306 aa PF13812 PPR_3 307-347 aa PF13041 PPR_2 308-356 aa PF01535 PPR 313-339 aa PF20431 E_motif 426-489 aa PF14432 DYW_deaminase 525-617 aa
XP_057806283.1
617 aa
N
1
308
617
PPR_2
PPR
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
E_motif
DYW_deaminase
C
PF13041 PPR_2 79-125 aa PF01535 PPR 81-105 aa PF01535 PPR 152-176 aa PF01535 PPR 180-207 aa PF01535 PPR 211-238 aa PF01535 PPR 283-306 aa PF13812 PPR_3 307-347 aa PF13041 PPR_2 308-356 aa PF01535 PPR 313-339 aa PF20431 E_motif 426-489 aa PF14432 DYW_deaminase 525-617 aa
XP_057806284.1
617 aa
N
1
308
617
PPR_2
PPR
PPR
PPR
PPR
PPR
PPR_3
PPR_2
PPR
E_motif
DYW_deaminase
C
PF13041 PPR_2 79-125 aa PF01535 PPR 81-105 aa PF01535 PPR 152-176 aa PF01535 PPR 180-207 aa PF01535 PPR 211-238 aa PF01535 PPR 283-306 aa PF13812 PPR_3 307-347 aa PF13041 PPR_2 308-356 aa PF01535 PPR 313-339 aa PF20431 E_motif 426-489 aa PF14432 DYW_deaminase 525-617 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806282.1 Pfam PF13041 PPR_2 Repeat 79 125 3.3e-44 149.5 PPR repeat family
XP_057806282.1 Pfam PF01535 PPR Repeat 81 105 4.6e-41 136.9 PPR repeat
XP_057806282.1 Pfam PF01535 PPR Repeat 152 176 4.6e-41 136.9 PPR repeat
XP_057806282.1 Pfam PF01535 PPR Repeat 180 207 4.6e-41 136.9 PPR repeat
XP_057806282.1 Pfam PF01535 PPR Repeat 211 238 4.6e-41 136.9 PPR repeat
XP_057806282.1 Pfam PF01535 PPR Repeat 283 306 4.6e-41 136.9 PPR repeat
XP_057806282.1 Pfam PF13812 PPR_3 Repeat 307 347 1e-12 48.7 Pentatricopeptide repeat domain
XP_057806282.1 Pfam PF13041 PPR_2 Repeat 308 356 3.3e-44 149.5 PPR repeat family
XP_057806282.1 Pfam PF01535 PPR Repeat 313 339 4.6e-41 136.9 PPR repeat
XP_057806282.1 Pfam PF20431 E_motif Repeat 426 489 1.7e-09 38.5 E motif
XP_057806282.1 Pfam PF14432 DYW_deaminase Domain 525 617 1.9e-36 124.5 DYW family of nucleic acid deaminases
XP_057806283.1 Pfam PF13041 PPR_2 Repeat 79 125 3.3e-44 149.5 PPR repeat family
XP_057806283.1 Pfam PF01535 PPR Repeat 81 105 4.6e-41 136.9 PPR repeat
XP_057806283.1 Pfam PF01535 PPR Repeat 152 176 4.6e-41 136.9 PPR repeat
XP_057806283.1 Pfam PF01535 PPR Repeat 180 207 4.6e-41 136.9 PPR repeat
XP_057806283.1 Pfam PF01535 PPR Repeat 211 238 4.6e-41 136.9 PPR repeat
XP_057806283.1 Pfam PF01535 PPR Repeat 283 306 4.6e-41 136.9 PPR repeat
XP_057806283.1 Pfam PF13812 PPR_3 Repeat 307 347 1e-12 48.7 Pentatricopeptide repeat domain
XP_057806283.1 Pfam PF13041 PPR_2 Repeat 308 356 3.3e-44 149.5 PPR repeat family
XP_057806283.1 Pfam PF01535 PPR Repeat 313 339 4.6e-41 136.9 PPR repeat
XP_057806283.1 Pfam PF20431 E_motif Repeat 426 489 1.7e-09 38.5 E motif
XP_057806283.1 Pfam PF14432 DYW_deaminase Domain 525 617 1.9e-36 124.5 DYW family of nucleic acid deaminases
XP_057806284.1 Pfam PF13041 PPR_2 Repeat 79 125 3.3e-44 149.5 PPR repeat family
XP_057806284.1 Pfam PF01535 PPR Repeat 81 105 4.6e-41 136.9 PPR repeat
XP_057806284.1 Pfam PF01535 PPR Repeat 152 176 4.6e-41 136.9 PPR repeat
XP_057806284.1 Pfam PF01535 PPR Repeat 180 207 4.6e-41 136.9 PPR repeat
XP_057806284.1 Pfam PF01535 PPR Repeat 211 238 4.6e-41 136.9 PPR repeat
XP_057806284.1 Pfam PF01535 PPR Repeat 283 306 4.6e-41 136.9 PPR repeat
XP_057806284.1 Pfam PF13812 PPR_3 Repeat 307 347 1e-12 48.7 Pentatricopeptide repeat domain
XP_057806284.1 Pfam PF13041 PPR_2 Repeat 308 356 3.3e-44 149.5 PPR repeat family
XP_057806284.1 Pfam PF01535 PPR Repeat 313 339 4.6e-41 136.9 PPR repeat
XP_057806284.1 Pfam PF20431 E_motif Repeat 426 489 1.7e-09 38.5 E motif
XP_057806284.1 Pfam PF14432 DYW_deaminase Domain 525 617 1.9e-36 124.5 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057950301.1
AGCAGAGATTCCGGCAGCGGAAAAAAAAGATCGCCGGCCAAGTCCATCACTATGGAATTTGGCGAATGGGGAACTAGGGTTCCATCTCAGTTGGCGCCAAAATAAAATTGGGTTTTCTTCATATGAAATCCAACGCTACTTCAAATTATTCCTTCAAAGATTTCCTTTTTTTTTTTTTCTTTTTCTTCTCCAATGATTCCATTACAATTCAGACAAAAATATTAATTCAAAGGGCTCGATTCTATCCGTAACAATTTCAT...
XM_057950300.1
AGCAGAGATTCCGGCAGCGGAAAAAAAAGATCGCCGGCCAAGTCCATCACTATGGAATTTGGCGAATGGGGAACTAGGGTTCCATCTCAGTTGGCGCCAAAATAAAATTGGGTTTTCTTCATATGAAATCCAACGCTACTTCAAATTATTCCTTCAAAGATTTCCTTTTTTTTTTTTTCTTTTTCTTCTCCAATGATTCCATTACAATTCAGACAAAAATATTAATTCAAAGGGCTCGATTCTATCCGTAACAATTTCAT...

CDS

3 records

下载 CDS FASTA
LOC131021200
ATGCAACCCCTTGCTTTCTCTCAGATCTCTGTAAGATTCATCTCTCAGCTACTAAGCAGACGCCCCCGCATCTCTCAAATTAAGCAGATTCATGCGCAGATCATCGTTCGATCACTCGCATCGGCACGCCTTTCTTTGATCGATTCGCTCATTCACTGTTATCTTCACTCCAAGAGCTTTAATTCTGCGAGAATCTTGTTCGATAACTATCGGTCGTCGCCGCCCCCGCCGATTCTGCTATGGAATCTCATGATGCGCGC...
LOC131021200
ATGCAACCCCTTGCTTTCTCTCAGATCTCTGTAAGATTCATCTCTCAGCTACTAAGCAGACGCCCCCGCATCTCTCAAATTAAGCAGATTCATGCGCAGATCATCGTTCGATCACTCGCATCGGCACGCCTTTCTTTGATCGATTCGCTCATTCACTGTTATCTTCACTCCAAGAGCTTTAATTCTGCGAGAATCTTGTTCGATAACTATCGGTCGTCGCCGCCCCCGCCGATTCTGCTATGGAATCTCATGATGCGCGC...

Protein

3 records

下载 Protein FASTA
XP_057806282.1
MQPLAFSQISVRFISQLLSRRPRISQIKQIHAQIIVRSLASARLSLIDSLIHCYLHSKSFNSARILFDNYRSSPPPPILLWNLMMRAYSKLQHSSEPINLFRQMINTQAKPDDYTFTFVITSCAHQDSVVCGRIIHGMALKNGTFLNLYVANSLIGMYAAFERVQDARDVFGEMSETDVFSWTSLVSAYAKNRDMRKAGEVFCKMPVRNDVSWAVMISGFVRSGRYTEALRYFHDMFREFEPNEAVLVCALSACANLGSL...
XP_057806283.1
MQPLAFSQISVRFISQLLSRRPRISQIKQIHAQIIVRSLASARLSLIDSLIHCYLHSKSFNSARILFDNYRSSPPPPILLWNLMMRAYSKLQHSSEPINLFRQMINTQAKPDDYTFTFVITSCAHQDSVVCGRIIHGMALKNGTFLNLYVANSLIGMYAAFERVQDARDVFGEMSETDVFSWTSLVSAYAKNRDMRKAGEVFCKMPVRNDVSWAVMISGFVRSGRYTEALRYFHDMFREFEPNEAVLVCALSACANLGSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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