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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002041

染色体: Chr04 坐标: 33138419-33140866 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002041
名称SmilChr04G002041
描述calmodulin-binding protein 60 C-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向33138419 - 33140866 / -

ID 对照

NCBI Gene IDLOC131021211
GeneID131021211
locus_tag-
NCBI NameLOC131021211
原始查询SmilChr04G002041

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calmodulin-binding protein 60 C-like
产物calmodulin-binding protein 60 C-like
ArabidopsisAT2G18750 (AT2G18750)
Calmodulin-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:816390]
identity=29.1; qcov=0.964; evalue=5.53e-36; confidence=low
RiceOs02g0177800
-
identity=30.1; qcov=0.777; evalue=5.3e-33; confidence=low
GOGO:0003700 (DNA-binding transcription factor activity); GO:0005516 (calmodulin binding); GO:0005634 (nucleus); GO:0043565 (sequence-specific DNA binding); GO:0080142 (regulation of salicylic acid biosynthetic process)
KEGG-
PfamPF07887 (Calmodulin_bind); PF20451 (Calmod_bind_M); PF20452 (Calmod_bind_C)
InterPro-
eggNOG-
NRGeneID:131021211

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057806292.1
2 Chromosome 染色体 0.00000 XP_057806292.1
3 Centromere 着丝粒 0.00000 XP_057806292.1
4 Chromatin 染色质 0.00000 XP_057806292.1
5 Telomere 端粒 0.00000 XP_057806292.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:33138603 C T EMS_canonical_SNV CDS_variant 4 A22,B46,B76,C49
Chr4:33138740 G A EMS_canonical_SNV CDS_variant 1 D7
Chr4:33138773 C T EMS_canonical_SNV CDS_variant 4 A25,B2,C19,C84
Chr4:33139229 G A EMS_canonical_SNV CDS_variant 1 B50
Chr4:33139261 C T EMS_canonical_SNV CDS_variant 1 B46
Chr4:33139271 C T EMS_canonical_SNV CDS_variant 1 D7
Chr4:33139500 C T EMS_canonical_SNV CDS_variant 4 B47,B58,B66,C82
Chr4:33139717 C CG 1bp_insertion frameshift_variant 2 B102,C76
Chr4:33139717 C CG 1bp_insertion CDS_variant 2 B102,C76
Chr4:33139789 C T EMS_canonical_SNV CDS_variant 2 C32,C68
Chr4:33139907 CA C 1bp_deletion frameshift_variant 2 B115,C42
Chr4:33139907 CA C 1bp_deletion CDS_variant 2 B115,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806292.1
468 aa
N
1
234
468
Calmodulin_bind
Calmodulin_bind
Calmod_bind_M
Calmod_bind_C
C
PF07887 Calmodulin_bind 67-123 aa PF07887 Calmodulin_bind 129-192 aa PF20451 Calmod_bind_M 207-269 aa PF20452 Calmod_bind_C 276-333 aa
XP_057806293.1
451 aa
N
1
226
451
Calmodulin_bind
Calmodulin_bind
Calmod_bind_M
Calmod_bind_C
C
PF07887 Calmodulin_bind 67-123 aa PF07887 Calmodulin_bind 129-192 aa PF20451 Calmod_bind_M 201-252 aa PF20452 Calmod_bind_C 259-316 aa
XP_057806294.1
385 aa
N
1
192
385
Calmodulin_bind
Calmodulin_bind
Calmod_bind_M
Calmod_bind_C
C
PF07887 Calmodulin_bind 1-57 aa PF07887 Calmodulin_bind 63-126 aa PF20451 Calmod_bind_M 135-186 aa PF20452 Calmod_bind_C 193-250 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806292.1 Pfam PF07887 Calmodulin_bind Domain 67 123 2.8e-20 73.6 Calmodulin binding protein-like N-terminal domain
XP_057806292.1 Pfam PF07887 Calmodulin_bind Domain 129 192 2.8e-20 73.6 Calmodulin binding protein-like N-terminal domain
XP_057806292.1 Pfam PF20451 Calmod_bind_M Domain 207 269 8.6e-15 55.8 Calmodulin binding protein central domain
XP_057806292.1 Pfam PF20452 Calmod_bind_C Domain 276 333 1.4e-10 41.9 Calmodulin binding protein C-terminal domain
XP_057806293.1 Pfam PF07887 Calmodulin_bind Domain 67 123 2.6e-20 73.8 Calmodulin binding protein-like N-terminal domain
XP_057806293.1 Pfam PF07887 Calmodulin_bind Domain 129 192 2.6e-20 73.8 Calmodulin binding protein-like N-terminal domain
XP_057806293.1 Pfam PF20451 Calmod_bind_M Domain 201 252 1.2e-10 42.6 Calmodulin binding protein central domain
XP_057806293.1 Pfam PF20452 Calmod_bind_C Domain 259 316 2e-10 41.4 Calmodulin binding protein C-terminal domain
XP_057806294.1 Pfam PF07887 Calmodulin_bind Domain 1 57 1.7e-20 74.4 Calmodulin binding protein-like N-terminal domain
XP_057806294.1 Pfam PF07887 Calmodulin_bind Domain 63 126 1.7e-20 74.4 Calmodulin binding protein-like N-terminal domain
XP_057806294.1 Pfam PF20451 Calmod_bind_M Domain 135 186 9.7e-11 42.8 Calmodulin binding protein central domain
XP_057806294.1 Pfam PF20452 Calmod_bind_C Domain 193 250 1.6e-10 41.7 Calmodulin binding protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057950311.1
TAGTCGTCATCTTGCTTGTAGTTTTCGTAGGTATTTCTGGGAAAATGATTAATTGTTGACGTGTGCCGCCAAAGTATCTGATGATGAGAGCAGAGCAGAGCATCTCACTGGATCTCAAGTTATATCCACAACACAATCTTGTTATAGATTCCCTATCAACCCCACACGCTTTTGCTACGCCAAAAGCTTAAGATTTATCTGCTGAAAGGTAGGCTGATTTGTTGCAGAATCAACTCCCTTGGAAAGGAAACTTGTTTTGA...
XM_057950310.1
GTCATCTTGCTTGTAGTTTTCGTAGGTATTTCTGGGAAAATGATTAATTGTTGACGTGTGCCGCCAAAGTATCTGATGATGAGAGCAGAGCAGAGCATCTCACTGGATCTCAAGTTATATCCACAACACAATCTTGTTATAGATTCCCTATCAACCCCACACGCTTTTGCTACGCCAAAAGCTTAAGATTTATCTGCTGAAAGGTAGGCTGATTTGTTGCAGAATCAACTCCCTTGGAAAGGAAACTTGTTTTGATTTTT...

CDS

3 records

下载 CDS FASTA
LOC131021211
ATGGATGACAAGTGGATGAAAATTGTTGTGGACGAACTCGAAGCGGAGAAAAGGAGAAGGTTTGCCAAGGTCCAAGAAGATTTAGAATTGGAGAAAAGGAGAAGGTTTGCCCAAGTCCAAGAGGAAATCGAATCAACAAAAAGGAGCATATTCGAGAGCTATTTCAAAGATGGGAATCCGAGCACATCTGAGAGGAAGATGAAACTGGAGTTGAGGAATGGGATTGCTGGAAAGATGTTCACCGGTGAGGAGATCAGAGG...
LOC131021211
ATGGATGACAAGTGGATGAAAATTGTTGTGGACGAACTCGAAGCGGAGAAAAGGAGAAGGTTTGCCAAGGTCCAAGAAGATTTAGAATTGGAGAAAAGGAGAAGGTTTGCCCAAGTCCAAGAGGAAATCGAATCAACAAAAAGGAGCATATTCGAGAGCTATTTCAAAGATGGGAATCCGAGCACATCTGAGAGGAAGATGAAACTGGAGTTGAGGAATGGGATTGCTGGAAAGATGTTCACCGGTGAGGAGATCAGAGG...

Protein

3 records

下载 Protein FASTA
XP_057806292.1
MDDKWMKIVVDELEAEKRRRFAKVQEDLELEKRRRFAQVQEEIESTKRSIFESYFKDGNPSTSERKMKLELRNGIAGKMFTGEEIRGEGDVPIEVALVDVETGAVVDDEPEASAQVEFLLLNASGGDVEGKQPILAGNVSLNLHRGLAVVNNIKIRHHASIIKPPQFKLCARLVGAASLRVKEAKTEAFALKIFRAKYYKKHKNPSLSDPVYRLVSVWKGGKIHKRLQDNKIYTVEDFLIQLLINPQRLMAIVKQPNKWK...
XP_057806293.1
MDDKWMKIVVDELEAEKRRRFAKVQEDLELEKRRRFAQVQEEIESTKRSIFESYFKDGNPSTSERKMKLELRNGIAGKMFTGEEIRGEGDVPIEVALVDVETGAVVDDEPEASAQVEFLLLNASGGDVEGKQPILAGNVSLNLHRGLAVVNNIKIRHHASIIKPPQFKLCARLVGAASLRVKEAKTEAFALKIFRAKFSVWKGGKIHKRLQDNKIYTVEDFLIQLLINPQRLMAIVKQPNKWKGIVNNAEACLSSERMYC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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