Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002043`

染色体: Chr04 坐标: 33148031-33151841 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002043`
名称	SmilChr04G002043
描述	calmodulin-binding protein 60 A
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	33148031 - 33151841 / `-`

ID 对照

NCBI Gene ID	`LOC131021213`
GeneID	`131021213`
locus_tag	`-`
NCBI Name	`LOC131021213`
原始查询	`SmilChr04G002043`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin-binding protein 60 A
产物	calmodulin-binding protein 60 A
Arabidopsis	`AT5G62570` (AT5G62570) Calmodulin binding protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:836377] identity=52.8; qcov=0.759; evalue=2.17e-139; confidence=high
Rice	`Os03g0436300` (Osthi7) - identity=43.2; qcov=1.04; evalue=3.65e-129; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005516 (calmodulin binding); GO:0005634 (nucleus); GO:0043565 (sequence-specific DNA binding); GO:0080142 (regulation of salicylic acid biosynthetic process)
KEGG	-
Pfam	PF07887 (Calmodulin_bind); PF20451 (Calmod_bind_M); PF20452 (Calmod_bind_C)
InterPro	-
eggNOG	-
NR	GeneID:131021213

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806295.1`
2	Chromosome	染色体	0.00000	`XP_057806295.1`
3	Centromere	着丝粒	0.00000	`XP_057806295.1`
4	Chromatin	染色质	0.00000	`XP_057806295.1`
5	Telomere	端粒	0.00000	`XP_057806295.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:33148681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,C1,C72
`Chr4:33148730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B38,B39,B85,C13
`Chr4:33149810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B5,C83
`Chr4:33150191`	`C`	`CT`	1bp_insertion	frameshift_variant	3	A3,B137,C41
`Chr4:33150191`	`C`	`CT`	1bp_insertion	CDS_variant	3	A3,B137,C41
`Chr4:33150316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B120,B62,B67
`Chr4:33150334`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B140,B59,B86
`Chr4:33151229`	`A`	`AT`	1bp_insertion	frameshift_variant	167	A13,A14,A15,A16,A18,A19,A20,A21,A24,A25,A3,A4,A9,B1,B10,B100,B101,B105,B108,B109,B11,B110,B112,B113,B117,B118,B119,B12,B120,B122,B123,B124,B128,B129,B13,B131,B133,B134,B135,B137,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B24,B26,B27,B28,B3,B31,B32,B33,B35,B38,B39,B41,B44,B47,B50,B52,B53,B54,B57,B58,B6,B61,B63,B64,B65,B66,B68,B69,B7,B70,B71,B72,B74,B75,B77,B78,B79,B8,B80,B81,B82,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B94,B97,B99,C1,C10,C11,C13,C15,C16,C17,C19,C2,C21,C23,C24,C25,C27,C28,C29,C30,C31,C32,C34,C35,C36,C4,C40,C41,C42,C43,C45,C46,C47,C48,C49,C5,C50,C53,C54,C55,C56,C57,C58,C6,C61,C62,C64,C66,C67,C68,C69,C74,C75,C77,C78,C8,C82,C84,C86,C9,D10,D2,D4,D5,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806295.1

526 aa

263

526

Calmodulin_bind

Calmod_bind_M

Calmod_bind_C

PF07887 Calmodulin_bind 91-233 aa PF20451 Calmod_bind_M 246-311 aa PF20452 Calmod_bind_C 322-375 aa

XP_057806296.1

522 aa

261

522

Calmodulin_bind

Calmod_bind_M

Calmod_bind_C

PF07887 Calmodulin_bind 87-229 aa PF20451 Calmod_bind_M 242-307 aa PF20452 Calmod_bind_C 318-371 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806295.1`	Pfam	`PF07887`	Calmodulin_bind	Domain	91	233	1.1e-51	175.6	Calmodulin binding protein-like N-terminal domain
`XP_057806295.1`	Pfam	`PF20451`	Calmod_bind_M	Domain	246	311	2.5e-29	102.4	Calmodulin binding protein central domain
`XP_057806295.1`	Pfam	`PF20452`	Calmod_bind_C	Domain	322	375	8.3e-13	49.0	Calmodulin binding protein C-terminal domain
`XP_057806296.1`	Pfam	`PF07887`	Calmodulin_bind	Domain	87	229	1e-51	175.6	Calmodulin binding protein-like N-terminal domain
`XP_057806296.1`	Pfam	`PF20451`	Calmod_bind_M	Domain	242	307	2.4e-29	102.4	Calmodulin binding protein central domain
`XP_057806296.1`	Pfam	`PF20452`	Calmod_bind_C	Domain	318	371	9.5e-13	48.8	Calmodulin binding protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950313.1
TTTTGTAAGTTTGACACGATTTCTATCAAATTTTCTTGCCGTTTACGCGCTTACTGGTAGCCCCCACGCGGTTTCATTCATGGACCTCTGCAGCTCCCTTCTCCCTCTCTCTTCCCCTCTTCCAACTCTTTTATGGCAAATCATGGAGCCACACCGCCCGCCGACCATACATGAAACCAAAGATTGAAGCTAGAAAGGCTTCAATCAGCTCGCAATTGAAACCTCTTTTCCCACACCTCGTAACGGCTTAAGAGAATCCA...

XM_057950312.1
CTATCAAATTTTCTTGCCGTTTACGCGCTTACTGGTAGCCCCCACGCGGTTTCATTCATGGACCTCTGCAGCTCCCTTCTCCCTCTCTCTTCCCCTCTTCCAACTCTTTTATGGCAAATCATGGAGCCACACCGCCCGCCGACCATACATGAAACCAAAGATTGAAGCTAGAAAGGCTTCAATCAGCTCGCAATTGAAACCTCTTTTCCCACACCTCGTAACGGCTTAAGAGAATCCAAGAAAAACCATATTTTACGTTT...

CDS

2 records

下载 CDS FASTA

LOC131021213
ATGTCGCAGAAGCGGCAACAGCGGGAGGAGGGCACGCCTTTTGACGAGAGGCGTCCCAGGAAATCAAAATCCTTTAAAAGTGTGGTGCTGGAGGTAATGAGCCTCTGCAAATTGCAACATCTCATGGAGCCGGTTCTTGAGCCCCTGATTCGTCGAGTTGTGAAAGAGGAAGTGGACTCCGCGTTGAGAAAATACATAATCAATATGAAAAGGAATTGTGGGAAGGACACACATTCTTCTGAACCGAGGGATTTGTGTTT...

LOC131021213
ATGTCGCAGAAGCGGCAACAGCGGGAGGAGGGCACGCCTTTTGACGAGAGGCGTCCCAGGAAATCAAAATCCTTTAAAAGGTTTGATATTTGTGTGGTGCTGGAGGTAATGAGCCTCTGCAAATTGCAACATCTCATGGAGCCGGTTCTTGAGCCCCTGATTCGTCGAGTTGTGAAAGAGGAAGTGGACTCCGCGTTGAGAAAATACATAATCAATATGAAAAGGAATTGTGGGAAGGACACACATTCTTCTGAACCGAG...

Protein

2 records

下载 Protein FASTA

XP_057806295.1
MSQKRQQREEGTPFDERRPRKSKSFKRFDICVVLEVMSLCKLQHLMEPVLEPLIRRVVKEEVDSALRKYIINMKRNCGKDTHSSEPRDLCLQFSNAISLPVFTGTRIEGEGSTRIGVSLVDSLTGEVVSSGHGSSEKVEIVVLEGDFDGDERWTLVEFQNNTVRERDGKKPLLSGDLIMTLQDGRGLVGNVMFTDNSSWTRSRKFRLGAKLLDSTSGIRVREARSEPFVVRDHRGELYKKHHPPSLSDEVWRLEKIGKGG...

XP_057806296.1
MSQKRQQREEGTPFDERRPRKSKSFKSVVLEVMSLCKLQHLMEPVLEPLIRRVVKEEVDSALRKYIINMKRNCGKDTHSSEPRDLCLQFSNAISLPVFTGTRIEGEGSTRIGVSLVDSLTGEVVSSGHGSSEKVEIVVLEGDFDGDERWTLVEFQNNTVRERDGKKPLLSGDLIMTLQDGRGLVGNVMFTDNSSWTRSRKFRLGAKLLDSTSGIRVREARSEPFVVRDHRGELYKKHHPPSLSDEVWRLEKIGKGGAFHK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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