Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002051`

染色体: Chr04 坐标: 33245328-33252843 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002051`
名称	SmilChr04G002051
描述	uncharacterized SmilChr04G002051
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	33245328 - 33252843 / `+`

ID 对照

NCBI Gene ID	`LOC131021221`
GeneID	`131021221`
locus_tag	`-`
NCBI Name	`LOC131021221`
原始查询	`SmilChr04G002051`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835075]; symbol=AT5G50110; hit=AT5G50110; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835075]; symbol=AT5G50110; hit=AT5G50110; species=arabidopsis; confidence=high
Arabidopsis	`AT5G50110` (AT5G50110) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835075] identity=60; qcov=0.83; evalue=2.34e-103; confidence=high
Rice	`Os06g0239000` - identity=59.4; qcov=0.357; evalue=1.83e-36; confidence=low
GO	GO:0005737 (cytoplasm); GO:0005829 (cytosol); GO:0006364 (rRNA processing); GO:0070043 (rRNA (guanine-N7-)-methyltransferase activity)
KEGG	-
Pfam	PF02527 (GidB)
InterPro	-
eggNOG	-
NR	GeneID:131021221

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057806308.1`
2	Mitochondrion	线粒体	0.40000	`XP_057806309.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057806313.1`
4	Nucleus	细胞核	0.00000	`XP_057806309.1`
5	Chromosome	染色体	0.00000	`XP_057806309.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:33245429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:33250446`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B3,C13
`Chr4:33250545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr4:33250792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,B7,C42,C8
`Chr4:33250832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,A8,C73
`Chr4:33251622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr4:33251625`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr4:33251969`	`GT`	`G`	1bp_deletion	frameshift_variant	10	A13,B2,B3,B4,B83,B89,C59,C60,D11,D6
`Chr4:33251974`	`AC`	`A`	1bp_deletion	frameshift_variant	14	A15,B100,B28,B33,B71,B84,B88,B9,B93,B94,C24,C56,C62,C77
`Chr4:33252049`	`CT`	`C`	1bp_deletion	frameshift_variant	50	A18,A3,A6,A7,A9,B11,B113,B114,B12,B138,B30,B31,B35,B4,B45,B46,B5,B55,B56,B60,B68,B7,B72,B73,B77,B80,B96,B97,B98,C2,C20,C23,C26,C28,C3,C38,C5,C52,C56,C59,C64,C66,C72,C73,C80,C83,C84,D10,D2,D8
`Chr4:33252125`	`CT`	`C`	1bp_deletion	frameshift_variant	52	A18,A3,A6,A7,A9,B11,B113,B114,B12,B130,B138,B30,B31,B35,B4,B41,B45,B46,B5,B55,B56,B60,B7,B72,B73,B77,B80,B96,B97,B98,C2,C20,C23,C26,C28,C3,C33,C38,C5,C52,C56,C59,C64,C66,C72,C73,C80,C83,C84,D10,D2,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806308.1

349 aa

174

349

GidB

PF02527 GidB 93-277 aa

XP_057806309.1

317 aa

158

317

GidB

PF02527 GidB 93-281 aa

XP_057806310.1

316 aa

158

316

GidB

PF02527 GidB 60-244 aa

XP_057806312.1

316 aa

158

316

GidB

PF02527 GidB 60-244 aa

XP_057806313.1

283 aa

142

283

GidB

PF02527 GidB 93-277 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806308.1`	Pfam	`PF02527`	GidB	Family	93	277	1.1e-52	178.8	rRNA small subunit methyltransferase G
`XP_057806309.1`	Pfam	`PF02527`	GidB	Family	93	281	3.8e-53	180.3	rRNA small subunit methyltransferase G
`XP_057806310.1`	Pfam	`PF02527`	GidB	Family	60	244	8.6e-53	179.1	rRNA small subunit methyltransferase G
`XP_057806312.1`	Pfam	`PF02527`	GidB	Family	60	244	8.6e-53	179.1	rRNA small subunit methyltransferase G
`XP_057806313.1`	Pfam	`PF02527`	GidB	Family	93	277	6.8e-53	179.5	rRNA small subunit methyltransferase G

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057950327.1
AGAAAAAAACAAAGGAACAAATAAGGTCAACTAAAGATCTTACGCTGAAATCGGACAAAGTTGCTGATGGAAGATATTGGATGGATGTAACTGCAGAGAATCCATCAACTGAAACAAAAAATCAACTCCAAATCATCTGGAAGAAGGCATGGAAATTGTGGAATGAAGGAAAGATAATGAAGTTGATGAGCAAGCAATATATATATGATAGTGGAATGGAAGATGCAAATAGGCCTAACACGTCGACACTGCTAGAGCTT...

XM_057950325.1
TAAGGTCAACTAAAGATCTTACGCTGAAATCGGACAAAGTTGCTGATGGAAGATATTGGATGGATGTAACTGCAGAGAATCCATCAACTGAAACAAAAAATCAACTCCAAATCATCTGGAAGAAGTTTTCACTCTTGCGCCAACAGCTGGCGCCAAAAATGTTGATTTGTATGAGCCCCCAAGCTTCTACTCTGCTTTCTTTGAGGTCTTTCTTCAAACACATTCCGCCAATTAAACCATCAACGCTCAAACTTCGCCAT...

CDS

5 records

下载 CDS FASTA

LOC131021221
ATGGATGTAACTGCAGAGAATCCATCAACTGAAACAAAAAATCAACTCCAAATCATCTGGAAGAAGTTTTCACTCTTGCGCCAACAGCTGGCGCCAAAAATGTTGATTTGTATGAGCCCCCAAGCTTCTACTCTGCTTTCTTTGAGGTCTTTCTTCAAACACATTCCGCCAATTAAACCATCAACGCTCAAACTTCGCCATTTTCCCGCCGGAATAGCCGCTTTCTCACGCGCCGCAGCTGCTACCCCCAATTTTCAAGC...

Protein

5 records

下载 Protein FASTA

XP_057806308.1
MDVTAENPSTETKNQLQIIWKKFSLLRQQLAPKMLICMSPQASTLLSLRSFFKHIPPIKPSTLKLRHFPAGIAAFSRAAAATPNFQALTSHQKHQVRLYIDSLLEWNQKMNLTAVKEENEVMERHVEDSLAIIEPVQDSYMLRCGSSFENLSVVDVGSGAGLPGMILAIACPSWKVTLLESLNKRCVFLEHVVSLVGLQNVQIVRDRAENVGQNLDYRENFDIAVARAVAEMRVLAEYCLPLVRVGGLFVAAKGHDPLEE...

XP_057806309.1
MDVTAENPSTETKNQLQIIWKKFSLLRQQLAPKMLICMSPQASTLLSLRSFFKHIPPIKPSTLKLRHFPAGIAAFSRAAAATPNFQALTSHQKHQVRLYIDSLLEWNQKMNLTAVKEENEVMERHVEDSLAIIEPVQDSYMLRCGSSFENLSVVDVGSGAGLPGMILAIACPSWKVTLLESLNKRCVFLEHVVSLVGLQNVQIVRDRAENVGQNLDYRENFDIAVARAVAEMRVLAEYCLPLVRVGGLFVAAKGHDPLEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器