Red Sage Omics 丹参基因组信息平台
首页 基因查询 ID 对照表 功能注释 结构域预测 Pfam 基因组工具 蛋白互作 亚细胞定位 表达量 共表达 同源/共线性 GO/KEGG 注释 TF 结合位点 TF 靶基因 EMS 突变 JBrowse BLAST 下载 关于 帮助
数据资源
ID 对照表 功能注释 功能检索 次生代谢专题 文献证据 结构域预测 Pfam 同源/共线性
分析工具
基因组工具 引物设计 同源重组引物设计 核酸翻译 BLAST 蛋白互作 亚细胞定位 共表达 GO/KEGG 注释 功能检索
调控/突变
TF 结合位点 TF 靶基因 EMS 突变
帮助
关于 帮助 资源与版本
中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002052

染色体: Chr04 坐标: 33245351-33249699 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002052
名称SmilChr04G002052
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向33245351 - 33249699 / -

ID 对照

NCBI Gene IDLOC131021219
GeneID131021219
locus_tag-
NCBI NameLOC131021219
原始查询SmilChr04G002052

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable LRR receptor-like serine/threonine-protein kinase At3g47570
产物probable LRR receptor-like serine/threonine-protein kinase At3g47570
ArabidopsisAT5G46330 (FLS2)
Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:834676]
identity=33.7; qcov=1.04; evalue=0; confidence=low
RiceOs02g0216000 (B1307A11.13)
-
identity=38; qcov=1.03; evalue=0; confidence=medium
GOGO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131021219

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057806305.1
2 Nucleus 细胞核 0.00000 XP_057806305.1
3 Chromosome 染色体 0.00000 XP_057806305.1
4 Centromere 着丝粒 0.00000 XP_057806305.1
5 Chromatin 染色质 0.00000 XP_057806305.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:33246010 G GT 1bp_insertion frameshift_variant 7 B136,B6,C24,C63,C76,C81,D1
Chr4:33246069 G A EMS_canonical_SNV CDS_variant 1 B52
Chr4:33246214 G A EMS_canonical_SNV CDS_variant 1 B52
Chr4:33246304 GC G 1bp_deletion frameshift_variant 1 B30
Chr4:33246304 GC G 1bp_deletion CDS_variant 1 B30
Chr4:33246394 GT G 1bp_deletion frameshift_variant 50 A20,A4,A9,B103,B105,B106,B107,B109,B119,B121,B127,B13,B130,B134,B14,B15,B16,B21,B23,B25,B29,B34,B36,B40,B41,B5,B53,B78,C12,C15,C17,C19,C27,C30,C31,C33,C35,C36,C45,C46,C51,C53,C54,C71,C74,C8,C83,C86,D1,D7
Chr4:33246438 AG A 1bp_deletion frameshift_variant 4 B38,B39,B85,C13
Chr4:33246438 AG A 1bp_deletion CDS_variant 4 B38,B39,B85,C13
Chr4:33246484 C T EMS_canonical_SNV CDS_variant 1 D10
Chr4:33246538 G A EMS_canonical_SNV CDS_variant 1 D10
Chr4:33246655 C T EMS_canonical_SNV CDS_variant 3 B130,B41,C33
Chr4:33246748 C T EMS_canonical_SNV CDS_variant 1 B1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806305.1
1162 aa
N
1
581
1162
LRRNT_2
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 31-70 aa PF23598 LRR_14 85-277 aa PF00560 LRR_1 101-120 aa PF13855 LRR_8 147-207 aa PF00560 LRR_1 148-170 aa PF00560 LRR_1 172-194 aa PF00560 LRR_1 196-217 aa PF00560 LRR_1 293-315 aa PF00560 LRR_1 366-385 aa PF00560 LRR_1 440-461 aa PF00560 LRR_1 463-485 aa PF00560 LRR_1 519-541 aa PF00560 LRR_1 592-614 aa PF00560 LRR_1 617-637 aa PF00560 LRR_1 640-662 aa PF00560 LRR_1 712-734 aa PF13855 LRR_8 712-771 aa PF00560 LRR_1 737-758 aa PF00069 Pkinase 879-1148 aa PF07714 PK_Tyr_Ser-Thr 882-1149 aa
XP_057806306.1
1162 aa
N
1
581
1162
LRRNT_2
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 31-70 aa PF23598 LRR_14 85-277 aa PF00560 LRR_1 101-120 aa PF13855 LRR_8 147-207 aa PF00560 LRR_1 148-170 aa PF00560 LRR_1 172-194 aa PF00560 LRR_1 196-217 aa PF00560 LRR_1 293-315 aa PF00560 LRR_1 366-385 aa PF00560 LRR_1 440-461 aa PF00560 LRR_1 463-485 aa PF00560 LRR_1 519-541 aa PF00560 LRR_1 592-614 aa PF00560 LRR_1 617-637 aa PF00560 LRR_1 640-662 aa PF00560 LRR_1 712-734 aa PF13855 LRR_8 712-771 aa PF00560 LRR_1 737-758 aa PF00069 Pkinase 879-1148 aa PF07714 PK_Tyr_Ser-Thr 882-1149 aa
XP_057806307.1
1138 aa
N
1
569
1138
LRRNT_2
LRR_14
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 31-70 aa PF23598 LRR_14 84-278 aa PF00560 LRR_1 101-120 aa PF13855 LRR_8 147-207 aa PF00560 LRR_1 148-170 aa PF00560 LRR_1 172-194 aa PF00560 LRR_1 196-217 aa PF00560 LRR_1 293-315 aa PF00560 LRR_1 366-385 aa PF00560 LRR_1 440-461 aa PF00560 LRR_1 463-485 aa PF00560 LRR_1 519-541 aa PF00560 LRR_1 568-590 aa PF00560 LRR_1 593-613 aa PF00560 LRR_1 616-638 aa PF00560 LRR_1 688-710 aa PF13855 LRR_8 688-747 aa PF00560 LRR_1 713-734 aa PF00069 Pkinase 855-1124 aa PF07714 PK_Tyr_Ser-Thr 858-1125 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806305.1 Pfam PF08263 LRRNT_2 Family 31 70 2.9e-10 41.0 Leucine rich repeat N-terminal domain
XP_057806305.1 Pfam PF23598 LRR_14 Repeat 85 277 1.3e-47 163.0 Leucine-rich repeat region
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 101 120 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF13855 LRR_8 Repeat 147 207 1.8e-48 162.8 Leucine rich repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 148 170 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 172 194 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 196 217 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 293 315 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 366 385 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 440 461 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 463 485 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 519 541 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 592 614 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 617 637 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 640 662 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 712 734 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF13855 LRR_8 Repeat 712 771 1.8e-48 162.8 Leucine rich repeat
XP_057806305.1 Pfam PF00560 LRR_1 Repeat 737 758 5.5e-64 198.9 Leucine Rich Repeat
XP_057806305.1 Pfam PF00069 Pkinase Domain 879 1148 8e-43 147.4 Protein kinase domain
XP_057806305.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 882 1149 1.3e-39 136.8 Protein tyrosine and serine/threonine kinase
XP_057806306.1 Pfam PF08263 LRRNT_2 Family 31 70 2.9e-10 41.0 Leucine rich repeat N-terminal domain
XP_057806306.1 Pfam PF23598 LRR_14 Repeat 85 277 1.3e-47 163.0 Leucine-rich repeat region
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 101 120 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF13855 LRR_8 Repeat 147 207 1.8e-48 162.8 Leucine rich repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 148 170 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 172 194 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 196 217 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 293 315 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 366 385 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 440 461 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 463 485 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 519 541 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 592 614 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 617 637 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 640 662 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 712 734 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF13855 LRR_8 Repeat 712 771 1.8e-48 162.8 Leucine rich repeat
XP_057806306.1 Pfam PF00560 LRR_1 Repeat 737 758 5.5e-64 198.9 Leucine Rich Repeat
XP_057806306.1 Pfam PF00069 Pkinase Domain 879 1148 8e-43 147.4 Protein kinase domain
XP_057806306.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 882 1149 1.3e-39 136.8 Protein tyrosine and serine/threonine kinase
XP_057806307.1 Pfam PF08263 LRRNT_2 Family 31 70 2.8e-10 41.0 Leucine rich repeat N-terminal domain
XP_057806307.1 Pfam PF23598 LRR_14 Repeat 84 278 2.5e-46 158.8 Leucine-rich repeat region
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 101 120 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF13855 LRR_8 Repeat 147 207 1.4e-45 153.6 Leucine rich repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 148 170 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 172 194 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 196 217 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 293 315 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 366 385 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 440 461 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 463 485 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 519 541 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 568 590 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 593 613 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 616 638 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 688 710 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF13855 LRR_8 Repeat 688 747 1.4e-45 153.6 Leucine rich repeat
XP_057806307.1 Pfam PF00560 LRR_1 Repeat 713 734 1.3e-62 194.8 Leucine Rich Repeat
XP_057806307.1 Pfam PF00069 Pkinase Domain 855 1124 7.7e-43 147.5 Protein kinase domain
XP_057806307.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 858 1125 1.3e-39 136.8 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057950324.1
CCATAATTTCGCAAGGGCCTTATTACTTTCTCTTTCCATTTATGAAATTTTAGGTTAAAAAAAGTCAAAGCAAATATGATTCTTTCCAGATCTTTGAAAACTAGTAGTGTTTCATTTGTTTTTCCTTCATTGCGTGGCAAGACTTTTCAAGTGCTCTAATTTTCCTTTTCTTGGGTCCCTATATAACCATCGTAAATATCCCCATTTATAATAAAGTATTCTTATGTATAATAATTCAAATTAAAAATTATATAAAAAAA...
XM_057950322.1
CATAATTTCGCAAGGGCCTTATTACTTTCTCTTTCCATTTATGAAATTTTAGGTTAAAAAAAGTCAAAGCAAATATGATTCTTTCCAGATCTTTGAAAACTAGTAGTGTTTCATTTGTTTTTCCTTCATTGCGTGGCAAGACTTTTCAAGTGCTCTAATTTTCCTTTTCTTGGGTCCCTATATAACCATCGTAAATATCCCCATTTATAATAAAGTATTCTTATGTATAATAATTCAAATTAAAAATTATATAAAAAAAA...

CDS

3 records

下载 CDS FASTA
LOC131021219
ATGGAGAAAACCTGCAAGTTTATTTTTGCATCTCTAGTCCTTTTACTAACCTCCCAAAAGCCTTGCACAGCCAAAACATTTACCAACCTCGCCACAGATCTTTCTTCCCTTCTCTCACTAAAAGCTCAAATCGTTGTAGACCCTTCTCACACTATCACAAAAAATTGGACTAACTCGAGCTCCGTTTGCAGCTGGATTGGCGTCACATGCGGCACACGCCACCAAAGAGTCGCCACATTAAATATCTCCAACATGGGCCT...
LOC131021219
ATGGAGAAAACCTGCAAGTTTATTTTTGCATCTCTAGTCCTTTTACTAACCTCCCAAAAGCCTTGCACAGCCAAAACATTTACCAACCTCGCCACAGATCTTTCTTCCCTTCTCTCACTAAAAGCTCAAATCGTTGTAGACCCTTCTCACACTATCACAAAAAATTGGACTAACTCGAGCTCCGTTTGCAGCTGGATTGGCGTCACATGCGGCACACGCCACCAAAGAGTCGCCACATTAAATATCTCCAACATGGGCCT...

Protein

3 records

下载 Protein FASTA
XP_057806305.1
MEKTCKFIFASLVLLLTSQKPCTAKTFTNLATDLSSLLSLKAQIVVDPSHTITKNWTNSSSVCSWIGVTCGTRHQRVATLNISNMGLSGTIPPQLGNLSFLVSLDLRRNNFSGTLPHELSLLRRLRFLSLLINNFRGEIPSWLSFLPKLDYLSLRNNSFTGSIPKSISNLTNLYYLDFSYNSLEGIIPQELGRLQKLQHLSIQYNHLSGIIPSDLFNISTLQVLAFTSNDLSGNLPNDMCANLPFIESVYLALNQLSGQI...
XP_057806306.1
MEKTCKFIFASLVLLLTSQKPCTAKTFTNLATDLSSLLSLKAQIVVDPSHTITKNWTNSSSVCSWIGVTCGTRHQRVATLNISNMGLSGTIPPQLGNLSFLVSLDLRRNNFSGTLPHELSLLRRLRFLSLLINNFRGEIPSWLSFLPKLDYLSLRNNSFTGSIPKSISNLTNLYYLDFSYNSLEGIIPQELGRLQKLQHLSIQYNHLSGIIPSDLFNISTLQVLAFTSNDLSGNLPNDMCANLPFIESVYLALNQLSGQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器