Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002060`

染色体: Chr04 坐标: 33350511-33354304 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002060`
名称	SmilChr04G002060
描述	pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	33350511 - 33354304 / `+`

ID 对照

NCBI Gene ID	`LOC131021228`
GeneID	`131021228`
locus_tag	`-`
NCBI Name	`LOC131021228`
原始查询	`SmilChr04G002060`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic-like
产物	pyridoxine/pyridoxamine 5'-phosphate oxidase 1%2C chloroplastic-like
Arabidopsis	`AT5G49970` (PPOX) pyridoxin (pyrodoxamine) 5'-phosphate oxidase [Source:NCBI gene (formerly Entrezgene);Acc:835061] identity=65.2; qcov=0.928; evalue=0; confidence=high
Rice	`Os10g0377800` - identity=63.7; qcov=0.923; evalue=1.94e-176; confidence=high
GO	GO:0004733 (pyridoxamine phosphate oxidase activity); GO:0005739 (mitochondrion); GO:0008615 (pyridoxine biosynthetic process); GO:0010181 (FMN binding); GO:0052856 (NAD(P)HX epimerase activity)
KEGG	smil00750 (Vitamin B6 metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01243 (PNPOx_N); PF03853 (YjeF_N); PF10590 (PNP_phzG_C)
InterPro	-
eggNOG	-
NR	GeneID:131021228

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057806323.1`
2	Cytosol	细胞质基质	1.00000	`XP_057806325.1`
3	Nucleus	细胞核	0.40000	`XP_057806323.1`
4	Chromosome	染色体	0.00000	`XP_057806323.1`
5	Centromere	着丝粒	0.00000	`XP_057806323.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:33350741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B108,B27,B99
`Chr4:33351527`	`C`	`CG`	1bp_insertion	frameshift_variant	4	B38,B39,B85,C13
`Chr4:33351527`	`C`	`CG`	1bp_insertion	CDS_variant	4	B38,B39,B85,C13
`Chr4:33351722`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B54
`Chr4:33351722`	`CT`	`C`	1bp_deletion	CDS_variant	1	B54
`Chr4:33351921`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,C81
`Chr4:33351943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr4:33352046`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C42
`Chr4:33352208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B76,C49
`Chr4:33352528`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B35
`Chr4:33352528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr4:33352547`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,C57,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806323.1

438 aa

219

438

YjeF_N

PNPOx_N

PNP_phzG_C

PF03853 YjeF_N 31-202 aa PF01243 PNPOx_N 281-401 aa PF10590 PNP_phzG_C 415-436 aa

XP_057806324.1

437 aa

218

437

YjeF_N

PNPOx_N

PNP_phzG_C

PF03853 YjeF_N 31-201 aa PF01243 PNPOx_N 280-400 aa PF10590 PNP_phzG_C 414-435 aa

XP_057806325.1

415 aa

208

415

YjeF_N

PNPOx_N

PF03853 YjeF_N 31-202 aa PF01243 PNPOx_N 281-374 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806323.1`	Pfam	`PF03853`	YjeF_N	Domain	31	202	4.1e-37	128.4	YjeF-related protein N-terminus
`XP_057806323.1`	Pfam	`PF01243`	PNPOx_N	Domain	281	401	2.5e-22	80.2	Pyridoxamine 5'-phosphate oxidase
`XP_057806323.1`	Pfam	`PF10590`	PNP_phzG_C	Domain	415	436	4.4e-08	33.6	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
`XP_057806324.1`	Pfam	`PF03853`	YjeF_N	Domain	31	201	3.3e-35	122.2	YjeF-related protein N-terminus
`XP_057806324.1`	Pfam	`PF01243`	PNPOx_N	Domain	280	400	2.5e-22	80.2	Pyridoxamine 5'-phosphate oxidase
`XP_057806324.1`	Pfam	`PF10590`	PNP_phzG_C	Domain	414	435	4.4e-08	33.6	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
`XP_057806325.1`	Pfam	`PF03853`	YjeF_N	Domain	31	202	3.7e-37	128.6	YjeF-related protein N-terminus
`XP_057806325.1`	Pfam	`PF01243`	PNPOx_N	Domain	281	374	1.9e-20	74.2	Pyridoxamine 5'-phosphate oxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057950341.1
CACCGCTGTGGATGCTCTAAGTAGGAGTAACCAACTTTTCTCACTCCTTCCTGTCCACAACTCTGTCTCTCTCCTTCATTAATAAGTGACGAGACTCTTCTGTCTTTAGTCTTTACATGATTTGCTCTAAAAGAACTGCTGTTGCTCCTGTTTTGACCGGGGAAATCAAATTAGCTGTAAGTTGAGGAAGAAATGGGGGACCGACAGCCTATTACCTATTTGACGCAGCAGCAGGCTGCTGGGATTGATGAGTTGCTGCT...

XM_057950342.1
CACCGCTGTGGATGCTCTAAGTAGGAGTAACCAACTTTTCTCACTCCTTCCTGTCCACAACTCTGTCTCTCTCCTTCATTAATAAGTGACGAGACTCTTCTGTCTTTAGTCTTTACATGATTTGCTCTAAAAGAACTGCTGTTGCTCCTGTTTTGACCGGGGAAATCAAATTAGCTGTAAGTTGAGGAAGAAATGGGGGACCGACAGCCTATTACCTATTTGACGCAGCAGCAGGCTGCTGGGATTGATGAGTTGCTGCT...

CDS

3 records

下载 CDS FASTA

LOC131021228
ATGGGGGACCGACAGCCTATTACCTATTTGACGCAGCAGCAGGCTGCTGGGATTGATGAGTTGCTGCTTGGCCCAATTGGTTTTACCATCGATCAGCTCATGGAACTGGCTGGTTTAAGTGTTGCATCTGCAATTGCGGAGGTGTACAGGCGAAGCAAATATAAGCGAGTACTTGTAATATGTGGTCCTGGAAATAACGGGGGGGATGGCCTTGTTGCTGCTCGTCATTTGCATCATTTTGGATATAATCCATGCATTTG...

Protein

3 records

下载 Protein FASTA

XP_057806323.1
MGDRQPITYLTQQQAAGIDELLLGPIGFTIDQLMELAGLSVASAIAEVYRRSKYKRVLVICGPGNNGGDGLVAARHLHHFGYNPCICYPKRTPKPLNEGLITQLESLPVPFLSLESLPEELLNFDILVDAIFGFSFLGDPRPPFDDLIRRMASLRENCRGHHKSPVIVSVDVPSGWHAEDGDISGEGIKPDMLVSLMAPKLCAKRFRGPHHFLGGRFVPQSIVSKYELKLPAYPGTSMCVQIGEPTCIDEPGVSPPKCIK...

XP_057806324.1
MGDRQPITYLTQQQAAGIDELLLGPIGFTIDQLMELAGLSVASAIAEVYRRSKYKRVLVICGPGNNGGDGLVAARHLHHFGYNPCICYPKRTPKPLNEGLITQLESLPVPFLSLESLPEELLNFDILVDAIFGFSFLDPRPPFDDLIRRMASLRENCRGHHKSPVIVSVDVPSGWHAEDGDISGEGIKPDMLVSLMAPKLCAKRFRGPHHFLGGRFVPQSIVSKYELKLPAYPGTSMCVQIGEPTCIDEPGVSPPKCIKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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