Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002075`

染色体: Chr04 坐标: 33487235-33494283 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002075`
名称	SmilChr04G002075
描述	uncharacterized SmilChr04G002075
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	33487235 - 33494283 / `-`

ID 对照

NCBI Gene ID	`LOC131021242`
GeneID	`131021242`
locus_tag	`-`
NCBI Name	`LOC131021242`
原始查询	`SmilChr04G002075`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Putative serine esterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837532]; symbol=AT1G09980; hit=AT1G09980; species=arabidopsis; confidence=high
产物	Putative serine esterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837532]; symbol=AT1G09980; hit=AT1G09980; species=arabidopsis; confidence=high
Arabidopsis	`AT1G09980` (AT1G09980) Putative serine esterase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837532] identity=55.3; qcov=1.03; evalue=0; confidence=high
Rice	`Os11g0167500` (OsSTA250) - identity=67.2; qcov=0.359; evalue=2.44e-136; confidence=low
GO	GO:0044255 (GO:0044255)
KEGG	-
Pfam	PF05057 (DUF676); PF12394 (DUF3657)
InterPro	-
eggNOG	-
NR	GeneID:131021242

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.40000	`XP_057806333.1`
2	Cytoplasm	细胞质	0.20000	`XP_057806333.1`
3	Endoplasmic reticulum	内质网	0.20000	`XP_057806333.1`
4	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057806333.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057806333.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:33487474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B5,C47,C83
`Chr4:33488393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr4:33489142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr4:33492936`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806333.1

754 aa

377

754

DUF3657

DUF676

PF12394 DUF3657 113-176 aa PF05057 DUF676 476-668 aa

XP_057806335.1

754 aa

377

754

DUF3657

DUF676

PF12394 DUF3657 113-176 aa PF05057 DUF676 476-668 aa

XP_057806336.1

754 aa

377

754

DUF3657

DUF676

PF12394 DUF3657 113-176 aa PF05057 DUF676 476-668 aa

XP_057806337.1

754 aa

377

754

DUF3657

DUF676

PF12394 DUF3657 113-176 aa PF05057 DUF676 476-668 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806333.1`	Pfam	`PF12394`	DUF3657	Family	113	176	4.1e-17	63.1	Protein FAM135
`XP_057806333.1`	Pfam	`PF05057`	DUF676	Family	476	668	8.9e-48	163.4	Putative serine esterase (DUF676)
`XP_057806335.1`	Pfam	`PF12394`	DUF3657	Family	113	176	4.1e-17	63.1	Protein FAM135
`XP_057806335.1`	Pfam	`PF05057`	DUF676	Family	476	668	8.9e-48	163.4	Putative serine esterase (DUF676)
`XP_057806336.1`	Pfam	`PF12394`	DUF3657	Family	113	176	4.1e-17	63.1	Protein FAM135
`XP_057806336.1`	Pfam	`PF05057`	DUF676	Family	476	668	8.9e-48	163.4	Putative serine esterase (DUF676)
`XP_057806337.1`	Pfam	`PF12394`	DUF3657	Family	113	176	4.1e-17	63.1	Protein FAM135
`XP_057806337.1`	Pfam	`PF05057`	DUF676	Family	476	668	8.9e-48	163.4	Putative serine esterase (DUF676)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057950350.1
AAATTTGCATGGAAGGAACACGATTTTCTTCCAAACTGAAATCAAACACTACGTGCTATTACGACTCTTGGACTCTCGTCTCCTCCTCCACGCGCCGCCGAGATCAGACCATCGCCTCCGGACATTGAAATCGTAGCAGCAATACGGTGGAAGGCAACCCTCACATTGCCAGAGTCTCCTCTTATAGGAAGTATGCTGCTCTGTGTTGAGACACTGCAAATATCTTTTCTTCAGAAACCAAGCCTGCATCAATAAAAGAT...

XM_057950354.1
AAATTTGCATGGAAGGAACACGATTTTCTTCCAAACTGAAATCAAACACTACGTGCTATTACGACTCTTGGACTCTCGTCTCCTCCTCCACGCGCCGCCGAGATCAGACCATCGCCTCCGGACATTGAAATCGTAGCAGCAATACGGTGGAAGGCAACCCTCACATTGCCAGAAGCCTTGTGGTGAAAGTGCTACTTTTGGTGCAGAGTCTCCTCTTATAGGAAGTATGCTGCTCTGTGTTGAGACACTGCAAATATCTT...

CDS

4 records

下载 CDS FASTA

LOC131021242
ATGTTGGAAGCTGTACATGAGATTGCCATTTACATTCACCGATTTCACAACCTCGACTTGTTTCAGCAAGGATGGTATCAAATCAAGGTCACAATGAGATGGGAGGATGAAGATTATGGTTCTGTGGGTACTCCAGCAAGAGTTATTCAATATGAAGCTCCTGATTTGGATTCTGAATATGTGCATGGAATATGGAGAATTGATGATGTGGACCACAGCTTCTCAACACACCCTTTTCGAATTAAATATGCAAAGCAGGA...

Protein

4 records

下载 Protein FASTA

XP_057806333.1
MLEAVHEIAIYIHRFHNLDLFQQGWYQIKVTMRWEDEDYGSVGTPARVIQYEAPDLDSEYVHGIWRIDDVDHSFSTHPFRIKYAKQDVPLSMMVTFNLSPSTLEVPSTSAVILTFELLYTPVLESRGYLQDSLDNTASVHEFRLPPKALLGLHAYCPVHFDAFHSVLVDATVHVSLLKMDCTSSPKVPSDPTAIKEDIREYDNTKQVMLVHALSCSSGILLEDLQMLGQAINQPVDMEDITSSELFGSSPRSDQEIPDAE...

XP_057806335.1
MLEAVHEIAIYIHRFHNLDLFQQGWYQIKVTMRWEDEDYGSVGTPARVIQYEAPDLDSEYVHGIWRIDDVDHSFSTHPFRIKYAKQDVPLSMMVTFNLSPSTLEVPSTSAVILTFELLYTPVLESRGYLQDSLDNTASVHEFRLPPKALLGLHAYCPVHFDAFHSVLVDATVHVSLLKMDCTSSPKVPSDPTAIKEDIREYDNTKQVMLVHALSCSSGILLEDLQMLGQAINQPVDMEDITSSELFGSSPRSDQEIPDAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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