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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr04G002105

染色体: Chr04 坐标: 33998307-34003165 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr04G002105
名称SmilChr04G002105
描述calcium-dependent protein kinase 10-like
染色体 / SeqIDChr04 / NC_080390.1
坐标与链方向33998307 - 34003165 / +

ID 对照

NCBI Gene IDLOC131021270
GeneID131021270
locus_tag-
NCBI NameLOC131021270
原始查询SmilChr04G002105

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述calcium-dependent protein kinase 10-like
产物calcium-dependent protein kinase 10-like
ArabidopsisAT1G74740 (CPK30)
calcium-dependent protein kinase 30 [Source:NCBI gene (formerly Entrezgene);Acc:843813]
identity=79; qcov=1.01; evalue=0; confidence=high
RiceOs01g0832300 (OsCDPK3)
-
identity=77.1; qcov=0.878; evalue=0; confidence=high
GOGO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
PfamPF00036 (EF-hand_1); PF00069 (Pkinase); PF03109 (ABC1); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro-
eggNOG-
NRGeneID:131021270

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057806370.1
2 Cytosol 细胞质基质 0.40000 XP_057806370.1
3 Cytoplasm 细胞质 0.20000 XP_057806370.1
4 Nucleus 细胞核 0.00000 XP_057806370.1
5 Chromosome 染色体 0.00000 XP_057806370.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr4:33998781 G A EMS_canonical_SNV CDS_variant 2 B110,B5
Chr4:33998826 C T EMS_canonical_SNV CDS_variant 1 D11
Chr4:33998908 C T EMS_canonical_SNV CDS_variant 1 D11
Chr4:33998958 C T EMS_canonical_SNV CDS_variant 2 B59,B86
Chr4:33998979 C T EMS_canonical_SNV CDS_variant 1 D7
Chr4:34000007 G A EMS_canonical_SNV CDS_variant 1 B102
Chr4:34001762 C T EMS_canonical_SNV CDS_variant 1 A18
Chr4:34002351 C T EMS_canonical_SNV CDS_variant 1 C49
Chr4:34002450 C T EMS_canonical_SNV CDS_variant 1 B133
Chr4:34002683 C T EMS_canonical_SNV CDS_variant 3 A7,B30,B35
Chr4:34002734 G A EMS_canonical_SNV CDS_variant 5 A7,B30,B38,B85,C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806370.1
542 aa
N
1
271
542
Pkinase
PK_Tyr_Ser-Thr
Kdo
ABC1
EF-hand_8
EF-hand_7
EF-hand_5
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_5
EF-hand_8
EF-hand_5
EF-hand_1
C
PF00069 Pkinase 61-318 aa PF07714 PK_Tyr_Ser-Thr 62-313 aa PF06293 Kdo 77-206 aa PF03109 ABC1 131-214 aa PF13833 EF-hand_8 350-387 aa PF13499 EF-hand_7 364-425 aa PF13202 EF-hand_5 366-388 aa PF00036 EF-hand_1 366-392 aa PF13405 EF-hand_6 366-394 aa PF13833 EF-hand_8 382-425 aa PF13499 EF-hand_7 436-499 aa PF00036 EF-hand_1 438-463 aa PF13405 EF-hand_6 438-463 aa PF13202 EF-hand_5 440-460 aa PF13833 EF-hand_8 472-499 aa PF13202 EF-hand_5 474-498 aa PF00036 EF-hand_1 474-500 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057806370.1 Pfam PF00069 Pkinase Domain 61 318 6e-77 259.3 Protein kinase domain
XP_057806370.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 62 313 3.8e-27 95.9 Protein tyrosine and serine/threonine kinase
XP_057806370.1 Pfam PF06293 Kdo Family 77 206 8e-07 29.4 Lipopolysaccharide kinase (Kdo/WaaP) family
XP_057806370.1 Pfam PF03109 ABC1 Domain 131 214 1e-05 25.5 ABC1 atypical kinase-like domain
XP_057806370.1 Pfam PF13833 EF-hand_8 Domain 350 387 4.1e-17 62.4 EF-hand domain pair
XP_057806370.1 Pfam PF13499 EF-hand_7 Domain 364 425 2.3e-29 102.3 EF-hand domain pair
XP_057806370.1 Pfam PF13202 EF-hand_5 Domain 366 388 1.9e-21 75.2 EF hand
XP_057806370.1 Pfam PF00036 EF-hand_1 Domain 366 392 7.1e-32 107.3 EF hand domain
XP_057806370.1 Pfam PF13405 EF-hand_6 Domain 366 394 6.3e-25 85.2 EF-hand domain
XP_057806370.1 Pfam PF13833 EF-hand_8 Domain 382 425 4.1e-17 62.4 EF-hand domain pair
XP_057806370.1 Pfam PF13499 EF-hand_7 Domain 436 499 2.3e-29 102.3 EF-hand domain pair
XP_057806370.1 Pfam PF00036 EF-hand_1 Domain 438 463 7.1e-32 107.3 EF hand domain
XP_057806370.1 Pfam PF13405 EF-hand_6 Domain 438 463 6.3e-25 85.2 EF-hand domain
XP_057806370.1 Pfam PF13202 EF-hand_5 Domain 440 460 1.9e-21 75.2 EF hand
XP_057806370.1 Pfam PF13833 EF-hand_8 Domain 472 499 4.1e-17 62.4 EF-hand domain pair
XP_057806370.1 Pfam PF13202 EF-hand_5 Domain 474 498 1.9e-21 75.2 EF hand
XP_057806370.1 Pfam PF00036 EF-hand_1 Domain 474 500 7.1e-32 107.3 EF hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057950387.1
TAATATTCTTTTTTCAAATGGCAATTTTTTCTCCAATTTGACCCGCGTTTTCTCATTCAAGACTTCTCTTCTCTCTCTCCCTCTCTCTCTCTTCACCATGCTCTGTTCCTCCTCCACCACCACCTCCCACCACCGCTGACGGCGGCGCCTCCACCTCCCCCACACCATGGGAAACTGCAACGTCTGTATCCGAGCCCCCGAAGCCGACCCCCCAACCCCCAGACCCTCCACCCCCAAAGGCAACAAAAAAGCGCGCGAGC...

CDS

1 records

下载 CDS FASTA
LOC131021270
ATGGGAAACTGCAACGTCTGTATCCGAGCCCCCGAAGCCGACCCCCCAACCCCCAGACCCTCCACCCCCAAAGGCAACAAAAAAGCGCGCGAGCGGCATCCGAATCCCTACGCCCAATCCCCGTCGCCGATCCGCGTGCTGAAGGACTTCATCCCGCGCACCAGGATCTCCGACAAGTACATCCTTGGCCGCGAGCTTGGCCGTGGCGAGTTCGGCGTGACCTACCTCTGCACGGACCGCGAGACGCGCGAGGCCCTCGC...

Protein

1 records

下载 Protein FASTA
XP_057806370.1
MGNCNVCIRAPEADPPTPRPSTPKGNKKARERHPNPYAQSPSPIRVLKDFIPRTRISDKYILGRELGRGEFGVTYLCTDRETREALACKSISKKKLRTAVDVEDVRREVAIMSSLPDHLNVVKLRATYEDSEAVHLVMELCEGGELFDRIVARGHYSERAAAGVARTVAEVVRMCHQHGVMHRDLKPENFLFANKKENSALKAIDFGLSVFFKPGEKFSEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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