Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr04G002121`

Chromosome: Chr04 Coordinates: 34218252-34220957 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr04G002121`
Name	SmilChr04G002121
Description	homeobox-leucine zipper protein HAT5-like
Chromosome / SeqID	Chr04 / NC_080390.1
Coordinates and Strand	34218252 - 34220957 / `-`

ID Mapping

NCBI Gene ID	`LOC131021281`
GeneID	`131021281`
locus_tag	`-`
NCBI Name	`LOC131021281`
Original query	`SmilChr04G002121`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	homeobox-leucine zipper protein HAT5-like
Product	homeobox-leucine zipper protein HAT5-like
Arabidopsis	`AT3G01470` (HB-1) homeobox 1 [Source:NCBI gene (formerly Entrezgene);Acc:821138] identity=43.8; qcov=0.585; evalue=6.62e-38; confidence=medium
Rice	`Os09g0470500` (Oshox4) - identity=66.3; qcov=0.301; evalue=2.95e-36; confidence=low
GO	GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0043565 (sequence-specific DNA binding); GO:0045893 (positive regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00046 (Homeodomain); PF02183 (HALZ)
InterPro	-
eggNOG	-
NR	GeneID:131021281

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806389.1`
2	Chromosome	染色体	0.00000	`XP_057806389.1`
3	Centromere	着丝粒	0.00000	`XP_057806389.1`
4	Chromatin	染色质	0.00000	`XP_057806389.1`
5	Telomere	端粒	0.00000	`XP_057806389.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr4:34218576`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B57,B88,C27,C55
`Chr4:34218700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr4:34218829`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C57
`Chr4:34218842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,C72
`Chr4:34219009`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B94,C8
`Chr4:34219147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,C42
`Chr4:34220405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C8

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057806389.1

316 aa

158

316

Homeodomain

HALZ

PF00046 Homeodomain 86-139 aa PF02183 HALZ 141-179 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057806389.1`	Pfam	`PF00046`	Homeodomain	Domain	86	139	5.6e-16	58.8	Homeodomain
`XP_057806389.1`	Pfam	`PF02183`	HALZ	Coiled-coil	141	179	1.4e-11	45.1	Homeobox associated leucine zipper

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057950406.1
TGGTGCAATTATATTTGGTAGAGAGGATCCATTTGGCCTTTCCCCCCACCTGAACATGAAATTGTATTTGCACCCAAAAGAATCTCTCTTACCTCACCTATTATTCATTTCTCCTCCGAATTCACCACATGCTACCAAATTCGCATCCAGAAATAGCCAATAATTTACGCACACCTTTTCACTCTTTTTCCTCCACCTTCTTCTTCTTCTTCTCCTGCACAGAGCTATCCCACTACTCCATCACGGAAAAAAGCACGCAC...

CDS

1 records

Download CDS FASTA

LOC131021281
ATGGCCGGTCGTGAATTTGCAAACAGCGGCGGCGGCGCTCTGGATCTGAGTAAGAAGATGAAAACTTGTGGCCATGATCGGCCTCTGGATTCTGTGTTTGCGTCTGCTCCTTCAAATTCCTTTCTTGGGCCGGGGGCGATGGTAAGTTTTGGAGCTGTTGGTAGGGATAACAGCTCAGGAAACTCGTTTTATCAGTCGTTTGAGATGCAGGAGAATGGGGAAGAATACTTGGACGACTATTTTAGTCAACCGGAGAAGAA...

Protein

1 records

Download Protein FASTA

XP_057806389.1
MAGREFANSGGGALDLSKKMKTCGHDRPLDSVFASAPSNSFLGPGAMVSFGAVGRDNSSGNSFYQSFEMQENGEEYLDDYFSQPEKKRRLSVDQVQFLERSFEVENKLEPDRKLQLANELGLQPRQIAVWFQNRRARCKTKHLETEYETLHSSYKSLKMDYDYLVKENEKLKAEVLHLKHDGTAQDVEHASSGESDTKELSEAIPVSTDEEDHKVSVSTSKNDEQSSTKSDVTNEDSPRLTDGIHHPLFVKSGESPHDFD...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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