当前解析结果
SmilChr04G002132| 统一新 Gene ID | SmilChr04G002132 |
|---|---|
| 名称 | SmilChr04G002132 |
| 描述 | uncharacterized SmilChr04G002132 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 34298839 - 34307781 / - |
| NCBI Gene ID | LOC131021290 |
|---|---|
| GeneID | 131021290 |
| locus_tag | - |
| NCBI Name | LOC131021290 |
| 原始查询 | SmilChr04G002132 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836397]; symbol=AT5G62760; hit=AT5G62760; species=arabidopsis; confidence=low |
| 产物 | P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836397]; symbol=AT5G62760; hit=AT5G62760; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G62760 (AT5G62760)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836397] identity=62.3; qcov=0.409; evalue=1.24e-116; confidence=low |
| Rice | Os02g0215000- identity=59.4; qcov=0.447; evalue=5.81e-113; confidence=low |
| GO | GO:0005634 (nucleus); GO:0032204 (regulation of telomere maintenance) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021290 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057806395.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057806395.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057806395.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057806395.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057806395.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:34299040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,B25,C23,C39 |
Chr4:34299177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B46,B75,B95 |
Chr4:34299178 |
G |
A |
EMS_canonical_SNV | stop_gained | 31 | A21,A25,B112,B117,B118,B12,B124,B125,B138,B21,B3,B30,B31,B41,B51,B65,B76,B79,B87,B95,C11,C13,C14,C25,C41,C46,C57,C58,C69,C78,D9 |
Chr4:34299381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr4:34299808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A19,B107,B114,C7 |
Chr4:34299867 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B132,B133,B90,B92 |
Chr4:34299943 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C54,C74 |
Chr4:34299958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B78,B82,C22,C47 |
Chr4:34299979 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | A18,B104,B140,C48 |
Chr4:34299979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B104,B140,C48 |
Chr4:34301977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr4:34302644 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B57,B78,B88,C27,C55 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。