当前解析结果
SmilChr04G002140| 统一新 Gene ID | SmilChr04G002140 |
|---|---|
| 名称 | SmilChr04G002140 |
| 描述 | ABC transporter A family member 2 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 34403886 - 34409865 / - |
| NCBI Gene ID | LOC131021297 |
|---|---|
| GeneID | 131021297 |
| locus_tag | - |
| NCBI Name | LOC131021297 |
| 原始查询 | SmilChr04G002140 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter A family member 2 |
| 产物 | ABC transporter A family member 2 |
| Arabidopsis | AT3G47730 (ABCA2)ATP-binding cassette A2 [Source:NCBI gene (formerly Entrezgene);Acc:823927] identity=69.8; qcov=0.995; evalue=0; confidence=high |
| Rice | Os08g0398000 (OsABCA3)- identity=66; qcov=1; evalue=0; confidence=high |
| GO | GO:0005319 (lipid carrier activity); GO:0005524 (ATP binding); GO:0006869 (lipid transport); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF12698 (ABC2_membrane_3); PF13304 (AAA_21); PF25158 (ABCA11_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021297 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057806408.1 |
| 2 | Endosome | 内体 | 0.60000 | XP_057806408.1 |
| 3 | Endosome membrane | 内体膜 | 0.60000 | XP_057806408.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057806408.1 |
| 5 | Secretory vesicle | Secretory vesicle | 0.20000 | XP_057806408.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:34404154 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr4:34404243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:34404261 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B76,C49 |
Chr4:34404275 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,B75 |
Chr4:34404531 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B75 |
Chr4:34404570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B46,B75 |
Chr4:34405092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,A3,B137,B80,C41 |
Chr4:34405259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C36,D8 |
Chr4:34406114 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:34406234 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,C47 |
Chr4:34406246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr4:34406317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B46,B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806408.1PF12698
ABC2_membrane_3 222-438 aa
PF00005
ABC_tran 546-692 aa
PF13304
AAA_21 650-724 aa
PF25158
ABCA11_C 846-900 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806408.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 222 | 438 | 2.1e-19 | 70.6 | ABC-2 family transporter protein |
XP_057806408.1 |
Pfam | PF00005 |
ABC_tran | Domain | 546 | 692 | 5e-26 | 92.6 | ABC transporter |
XP_057806408.1 |
Pfam | PF13304 |
AAA_21 | Domain | 650 | 724 | 1.5e-12 | 48.9 | AAA domain, putative AbiEii toxin, Type IV TA system |
XP_057806408.1 |
Pfam | PF25158 |
ABCA11_C | Domain | 846 | 900 | 2.7e-30 | 104.7 | ABC transporter A family member 11-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。