当前解析结果
SmilChr04G002141| 统一新 Gene ID | SmilChr04G002141 |
|---|---|
| 名称 | SmilChr04G002141 |
| 描述 | ABC transporter A family member 7-like |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 34429570 - 34437474 / + |
| NCBI Gene ID | LOC131021298 |
|---|---|
| GeneID | 131021298 |
| locus_tag | - |
| NCBI Name | LOC131021298 |
| 原始查询 | SmilChr04G002141 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter A family member 7-like |
| 产物 | ABC transporter A family member 7-like |
| Arabidopsis | AT3G47780 (ABCA7)ABC2 homolog 6 [Source:NCBI gene (formerly Entrezgene);Acc:823932] identity=69.3; qcov=1; evalue=0; confidence=high |
| Rice | Os08g0398300 (OsABCA4)- identity=64.5; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005319 (lipid carrier activity); GO:0005524 (ATP binding); GO:0006869 (lipid transport); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF12698 (ABC2_membrane_3); PF13304 (AAA_21); PF24526 (ABCA12_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021298 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057806409.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057806411.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057806411.1 |
| 4 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057806409.1 |
| 5 | Endosome membrane | 内体膜 | 0.20000 | XP_057806409.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:34429734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B130,B58,B66,B99 |
Chr4:34430513 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B114,B25,C23 |
Chr4:34430522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:34430716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr4:34430952 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C57 |
Chr4:34430952 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C57 |
Chr4:34431174 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr4:34434692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B76,C49 |
Chr4:34434696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,A3,B137,B80,C41 |
Chr4:34434708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr4:34434742 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:34434864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B85,C11,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806409.1PF12698
ABC2_membrane_3 276-556 aa
PF00005
ABC_tran 646-790 aa
PF13304
AAA_21 759-822 aa
PF24526
ABCA12_C 856-906 aa
XP_057806410.1PF12698
ABC2_membrane_3 276-556 aa
PF00005
ABC_tran 646-790 aa
PF13304
AAA_21 759-822 aa
PF24526
ABCA12_C 846-885 aa
XP_057806411.1PF12698
ABC2_membrane_3 118-398 aa
PF00005
ABC_tran 488-632 aa
PF13304
AAA_21 601-664 aa
PF24526
ABCA12_C 698-748 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806409.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 276 | 556 | 1.5e-12 | 48.0 | ABC-2 family transporter protein |
XP_057806409.1 |
Pfam | PF00005 |
ABC_tran | Domain | 646 | 790 | 3.4e-25 | 90.0 | ABC transporter |
XP_057806409.1 |
Pfam | PF13304 |
AAA_21 | Domain | 759 | 822 | 6.2e-11 | 43.5 | AAA domain, putative AbiEii toxin, Type IV TA system |
XP_057806409.1 |
Pfam | PF24526 |
ABCA12_C | Domain | 856 | 906 | 8.4e-31 | 106.6 | ABCA12-like, C-terminal domain |
XP_057806410.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 276 | 556 | 1.4e-12 | 48.1 | ABC-2 family transporter protein |
XP_057806410.1 |
Pfam | PF00005 |
ABC_tran | Domain | 646 | 790 | 3.2e-25 | 90.0 | ABC transporter |
XP_057806410.1 |
Pfam | PF13304 |
AAA_21 | Domain | 759 | 822 | 5.8e-11 | 43.6 | AAA domain, putative AbiEii toxin, Type IV TA system |
XP_057806410.1 |
Pfam | PF24526 |
ABCA12_C | Domain | 846 | 885 | 1.4e-21 | 77.1 | ABCA12-like, C-terminal domain |
XP_057806411.1 |
Pfam | PF12698 |
ABC2_membrane_3 | Family | 118 | 398 | 1.2e-12 | 48.3 | ABC-2 family transporter protein |
XP_057806411.1 |
Pfam | PF00005 |
ABC_tran | Domain | 488 | 632 | 2.4e-25 | 90.4 | ABC transporter |
XP_057806411.1 |
Pfam | PF13304 |
AAA_21 | Domain | 601 | 664 | 3.9e-11 | 44.2 | AAA domain, putative AbiEii toxin, Type IV TA system |
XP_057806411.1 |
Pfam | PF24526 |
ABCA12_C | Domain | 698 | 748 | 5.9e-31 | 107.1 | ABCA12-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。