当前解析结果
SmilChr04G002182| 统一新 Gene ID | SmilChr04G002182 |
|---|---|
| 名称 | SmilChr04G002182 |
| 描述 | subtilisin-like protease SBT2.6 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 35270819 - 35276592 / + |
| NCBI Gene ID | LOC131021333 |
|---|---|
| GeneID | 131021333 |
| locus_tag | - |
| NCBI Name | LOC131021333 |
| 原始查询 | SmilChr04G002182 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | subtilisin-like protease SBT2.6 |
| 产物 | subtilisin-like protease SBT2.6 |
| Arabidopsis | AT4G30020 (AT4G30020)PA-domain containing subtilase family protein [Source:NCBI gene (formerly Entrezgene);Acc:829125] identity=80.8; qcov=0.994; evalue=0; confidence=high |
| Rice | Os06g0700000 (OsSub52)- identity=71.4; qcov=1; evalue=0; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00082 (Peptidase_S8); PF02225 (PA); PF05922 (Inhibitor_I9); PF06280 (fn3_5); PF17766 (fn3_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021333 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057806470.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057806470.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806470.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806470.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806470.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:35271853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,C23 |
Chr4:35272966 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B2,B25,B85,C37 |
Chr4:35272968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B41 |
Chr4:35273271 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B48,B60 |
Chr4:35273373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:35273505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr4:35273791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr4:35273988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B69,B91 |
Chr4:35274373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr4:35274520 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,D10 |
Chr4:35274550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B2,B44,C37 |
Chr4:35274806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806470.1PF05922
Inhibitor_I9 71-133 aa
PF00082
Peptidase_S8 160-641 aa
PF02225
PA 406-500 aa
PF06280
fn3_5 722-817 aa
PF17766
fn3_6 725-817 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806470.1 |
Pfam | PF05922 |
Inhibitor_I9 | Domain | 71 | 133 | 2.5e-14 | 54.4 | Peptidase inhibitor I9 |
XP_057806470.1 |
Pfam | PF00082 |
Peptidase_S8 | Domain | 160 | 641 | 1.3e-46 | 159.9 | Subtilase family |
XP_057806470.1 |
Pfam | PF02225 |
PA | Domain | 406 | 500 | 6.5e-06 | 26.9 | PA domain |
XP_057806470.1 |
Pfam | PF06280 |
fn3_5 | Domain | 722 | 817 | 1.9e-16 | 61.4 | Fn3-like domain |
XP_057806470.1 |
Pfam | PF17766 |
fn3_6 | Domain | 725 | 817 | 3.9e-17 | 62.9 | Fibronectin type-III domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。