当前解析结果
SmilChr04G002184| 统一新 Gene ID | SmilChr04G002184 |
|---|---|
| 名称 | SmilChr04G002184 |
| 描述 | uncharacterized SmilChr04G002184 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 35279997 - 35286523 / + |
| NCBI Gene ID | LOC131021335 |
|---|---|
| GeneID | 131021335 |
| locus_tag | - |
| NCBI Name | LOC131021335 |
| 原始查询 | SmilChr04G002184 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835829]; symbol=AT5G57230; hit=AT5G57230; species=arabidopsis; confidence=high |
| 产物 | Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835829]; symbol=AT5G57230; hit=AT5G57230; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G57230 (AT5G57230)Thioredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835829] identity=75.3; qcov=1; evalue=4.89e-92; confidence=high |
| Rice | Os06g0482200- identity=73.1; qcov=0.987; evalue=1.04e-87; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021335 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057806472.1 |
| 2 | Endoplasmic reticulum lumen | 内质网腔 | 0.60000 | XP_057806473.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057806472.1 |
| 4 | Melanosome | Melanosome | 0.20000 | XP_057806473.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057806472.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:35281802 |
G |
GT |
1bp_insertion | frameshift_variant | 18 | B101,B113,B115,B128,B135,B26,B68,B75,B87,C15,C39,C40,C42,C61,C74,C85,C9,D2 |
Chr4:35281809 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B122,B62,B67 |
Chr4:35283545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B30,B35,B55,C23 |
Chr4:35285302 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B25,C23 |
Chr4:35285302 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B25,C23 |
Chr4:35285306 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B25,C23 |
Chr4:35285306 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B25,C23 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。