当前解析结果
SmilChr04G002194| 统一新 Gene ID | SmilChr04G002194 |
|---|---|
| 名称 | SmilChr04G002194 |
| 描述 | uncharacterized SmilChr04G002194 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 35493357 - 35496672 / - |
| NCBI Gene ID | LOC131023361 |
|---|---|
| GeneID | 131023361 |
| locus_tag | - |
| NCBI Name | LOC131023361 |
| 原始查询 | SmilChr04G002194 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RNA polymerase II, Rpb4, core protein [Source:NCBI gene (formerly Entrezgene);Acc:836415]; symbol=AT5G62950; hit=AT5G62950; species=arabidopsis; confidence=weak |
| 产物 | RNA polymerase II, Rpb4, core protein [Source:NCBI gene (formerly Entrezgene);Acc:836415]; symbol=AT5G62950; hit=AT5G62950; species=arabidopsis; confidence=weak |
| Arabidopsis | AT5G62950 (AT5G62950)RNA polymerase II, Rpb4, core protein [Source:NCBI gene (formerly Entrezgene);Acc:836415] identity=61.3; qcov=0.242; evalue=1.79e-32; confidence=weak |
| Rice | Os12g0488800- identity=50.5; qcov=0.236; evalue=5.31e-24; confidence=weak |
| GO | GO:0000166 (nucleotide binding); GO:0005666 (RNA polymerase III complex); GO:0006384 (transcription initiation at RNA polymerase III promoter) |
| KEGG | - |
| Pfam | PF03874 (RNA_pol_Rpb4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023361 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057808884.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057808884.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057808884.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808884.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808884.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:35493479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B103,B52,C25 |
Chr4:35493494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B36,B84,C67 |
Chr4:35493497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B34,C51 |
Chr4:35493503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr4:35493507 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B63,B67,C24 |
Chr4:35493509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:35493526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,B128,B78 |
Chr4:35493538 |
CAT |
C |
2bp_deletion | frameshift_variant | 48 | A20,A21,A22,A25,A3,A4,A5,B100,B103,B11,B110,B125,B128,B129,B131,B137,B16,B2,B20,B25,B26,B34,B36,B47,B55,B56,B60,B73,B75,B80,B83,B92,C27,C37,C4,C43,C46,C51,C56,C67,C72,C80,C82,C87,C9,D2,D4,D6 |
Chr4:35493564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C37,C7 |
Chr4:35493579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
Chr4:35493590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A5,B75,C43 |
Chr4:35493642 |
C |
CAA |
2bp_insertion | frameshift_variant | 5 | A13,A14,B103,B133,B135 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808884.1PF03874
RNA_pol_Rpb4 154-235 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808884.1 |
Pfam | PF03874 |
RNA_pol_Rpb4 | Family | 154 | 235 | 6.8e-08 | 33.5 | RNA polymerase Rpb4 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。