当前解析结果
SmilChr04G002206| 统一新 Gene ID | SmilChr04G002206 |
|---|---|
| 名称 | SmilChr04G002206 |
| 描述 | uncharacterized SmilChr04G002206 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 35735867 - 35738296 / - |
| NCBI Gene ID | LOC131021356 |
|---|---|
| GeneID | 131021356 |
| locus_tag | - |
| NCBI Name | LOC131021356 |
| 原始查询 | SmilChr04G002206 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Uncharacterized conserved protein UCP015417, vWA [Source:NCBI gene (formerly Entrezgene);Acc:831161]; symbol=AT5G13210; hit=AT5G13210; species=arabidopsis; confidence=high |
| 产物 | Uncharacterized conserved protein UCP015417, vWA [Source:NCBI gene (formerly Entrezgene);Acc:831161]; symbol=AT5G13210; hit=AT5G13210; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G13210 (AT5G13210)Uncharacterized conserved protein UCP015417, vWA [Source:NCBI gene (formerly Entrezgene);Acc:831161] identity=59.5; qcov=0.979; evalue=0; confidence=high |
| Rice | Os06g0652100- identity=55; qcov=0.917; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF11443 (DUF2828); PF25043 (DUF7788) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021356 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057806499.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057806499.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806499.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806499.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806499.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:35736159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,C11,C69 |
Chr4:35736765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B124,B88 |
Chr4:35736781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B104,B113,B124,B88,B9 |
Chr4:35736891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr4:35737492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr4:35737793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C56 |
Chr4:35737810 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C56 |
Chr4:35737810 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C56 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057806499.1PF11443
DUF2828 91-464 aa
PF25043
DUF7788 466-646 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806499.1 |
Pfam | PF11443 |
DUF2828 | Repeat | 91 | 464 | 1.2e-133 | 446.7 | Domain of unknown function (DUF2828) |
XP_057806499.1 |
Pfam | PF25043 |
DUF7788 | Domain | 466 | 646 | 3.9e-80 | 269.0 | Domain of unknown function (DUF7788) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。