Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr04G002232`

Chromosome: Chr04 Coordinates: 36032423-36033049 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr04G002232`
Name	SmilChr04G002232
Description	mitochondrial import receptor subunit TOM7-1-like
Chromosome / SeqID	Chr04 / NC_080390.1
Coordinates and Strand	36032423 - 36033049 / `+`

ID Mapping

NCBI Gene ID	`LOC131021377`
GeneID	`131021377`
locus_tag	`-`
NCBI Name	`LOC131021377`
Original query	`SmilChr04G002232`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	mitochondrial import receptor subunit TOM7-1-like
Product	mitochondrial import receptor subunit TOM7-1-like
Arabidopsis	`AT5G41685` (AT5G41685) Mitochondrial outer membrane translocase complex, subunit Tom7 [Source:NCBI gene (formerly Entrezgene);Acc:834171] identity=58.8; qcov=1.03; evalue=9.38e-23; confidence=medium
Rice	`Os01g0626300` - identity=68.8; qcov=1.03; evalue=4.82e-32; confidence=medium
GO	GO:0005742 (mitochondrial outer membrane translocase complex); GO:0030150 (protein import into mitochondrial matrix)
KEGG	-
Pfam	PF08038 (Tom7)
InterPro	-
eggNOG	-
NR	GeneID:131021377

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057806521.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057806521.1`
3	Mitochondrion inner membrane	线粒体内膜	0.20000	`XP_057806521.1`
4	Mitochondrion outer membrane	线粒体外膜	0.20000	`XP_057806521.1`
5	Nucleus	细胞核	0.00000	`XP_057806521.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr4:36032740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B83,B94,C79

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057806521.1

78 aa

Tom7

PF08038 Tom7 36-75 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057806521.1`	Pfam	`PF08038`	Tom7	Family	36	75	2.4e-19	69.5	TOM7 family

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057950538.1
TAATTGTAACATTAACGCAGAAGCAGAGTATCCCAAAAAAAGTTATAGCCGATTGCCGCAGCTGCAAATTGGCCCCCCAATCTGAGCCCTAAAACTCAAAAATCTTACCGATCACAGATGGCTTCGAGGGTGTCTCTGAAGGCCGGGAAAGGAAAGGTCGTCAGGAAATCCGCGGCGGCGGACGAAGAGGAGAGTTCGGTGGCGGCGGCGGGGAAGTTCGTCAAGGAGTGGAGCACCTGGGCCATGAAGAAGGCCAAAGT...

CDS

1 records

Download CDS FASTA

LOC131021377
ATGGCTTCGAGGGTGTCTCTGAAGGCCGGGAAAGGAAAGGTCGTCAGGAAATCCGCGGCGGCGGACGAAGAGGAGAGTTCGGTGGCGGCGGCGGGGAAGTTCGTCAAGGAGTGGAGCACCTGGGCCATGAAGAAGGCCAAAGTCGTCACTCATTACGGCTTCATCCCGTTGGTTATCATCATCGGCATGAACTCGGAGCCCAAACCATCTCTCTCTCAGCTCCTCAGCCCCGTATGA

Protein

1 records

Download Protein FASTA

XP_057806521.1
MASRVSLKAGKGKVVRKSAAADEEESSVAAAGKFVKEWSTWAMKKAKVVTHYGFIPLVIIIGMNSEPKPSLSQLLSPV

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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