当前解析结果
SmilChr04G002234| 统一新 Gene ID | SmilChr04G002234 |
|---|---|
| 名称 | SmilChr04G002234 |
| 描述 | uncharacterized SmilChr04G002234 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 36054519 - 36058067 / - |
| NCBI Gene ID | LOC131021379 |
|---|---|
| GeneID | 131021379 |
| locus_tag | - |
| NCBI Name | LOC131021379 |
| 原始查询 | SmilChr04G002234 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | confidence=no_hit |
| 产物 | confidence=no_hit |
| Arabidopsis | -- |
| Rice | -- |
| GO | GO:0003824 (catalytic activity) |
| KEGG | - |
| Pfam | PF00155 (Aminotran_1_2); PF00266 (Aminotran_5); PF01041 (DegT_DnrJ_EryC1); PF01212 (Beta_elim_lyase); PF01276 (OKR_DC_1); PF03711 (OKR_DC_1_C); PF05889 (SepSecS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021379 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057806526.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057806526.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806526.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806526.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806526.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:36054754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B40,B94,C82 |
Chr4:36054760 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr4:36054771 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B63,B86 |
Chr4:36054813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr4:36054862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr4:36055380 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr4:36055642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,C41 |
Chr4:36055695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr4:36056014 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B43 |
Chr4:36056014 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B43 |
Chr4:36056074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,C72,D4 |
Chr4:36057919 |
GGT |
G |
2bp_deletion | frameshift_variant | 1 | C14 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806526.1PF01276
OKR_DC_1 100-409 aa
PF01212
Beta_elim_lyase 162-343 aa
PF00155
Aminotran_1_2 163-326 aa
PF00266
Aminotran_5 163-326 aa
PF01041
DegT_DnrJ_EryC1 181-297 aa
PF05889
SepSecS 200-326 aa
PF03711
OKR_DC_1_C 506-566 aa
XP_057806527.1PF01276
OKR_DC_1 67-376 aa
PF01212
Beta_elim_lyase 129-310 aa
PF00155
Aminotran_1_2 130-293 aa
PF00266
Aminotran_5 130-293 aa
PF01041
DegT_DnrJ_EryC1 148-264 aa
PF05889
SepSecS 167-293 aa
PF03711
OKR_DC_1_C 473-533 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806526.1 |
Pfam | PF01276 |
OKR_DC_1 | Domain | 100 | 409 | 6.2e-68 | 230.2 | Orn/Lys/Arg decarboxylase, major domain |
XP_057806526.1 |
Pfam | PF01212 |
Beta_elim_lyase | Domain | 162 | 343 | 2.2e-06 | 27.9 | Beta-eliminating lyase |
XP_057806526.1 |
Pfam | PF00155 |
Aminotran_1_2 | Domain | 163 | 326 | 2.8e-09 | 37.4 | Aminotransferase class I and II |
XP_057806526.1 |
Pfam | PF00266 |
Aminotran_5 | Domain | 163 | 326 | 4.6e-05 | 23.3 | Aminotransferase class-V |
XP_057806526.1 |
Pfam | PF01041 |
DegT_DnrJ_EryC1 | Domain | 181 | 297 | 6.6e-07 | 29.6 | DegT/DnrJ/EryC1/StrS aminotransferase family |
XP_057806526.1 |
Pfam | PF05889 |
SepSecS | Domain | 200 | 326 | 5.5e-05 | 22.8 | O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS |
XP_057806526.1 |
Pfam | PF03711 |
OKR_DC_1_C | Domain | 506 | 566 | 4.6e-10 | 40.1 | Orn/Lys/Arg decarboxylase, C-terminal domain |
XP_057806527.1 |
Pfam | PF01276 |
OKR_DC_1 | Domain | 67 | 376 | 5.1e-68 | 230.5 | Orn/Lys/Arg decarboxylase, major domain |
XP_057806527.1 |
Pfam | PF01212 |
Beta_elim_lyase | Domain | 129 | 310 | 2e-06 | 28.1 | Beta-eliminating lyase |
XP_057806527.1 |
Pfam | PF00155 |
Aminotran_1_2 | Domain | 130 | 293 | 2.4e-09 | 37.6 | Aminotransferase class I and II |
XP_057806527.1 |
Pfam | PF00266 |
Aminotran_5 | Domain | 130 | 293 | 4.2e-05 | 23.4 | Aminotransferase class-V |
XP_057806527.1 |
Pfam | PF01041 |
DegT_DnrJ_EryC1 | Domain | 148 | 264 | 6e-07 | 29.7 | DegT/DnrJ/EryC1/StrS aminotransferase family |
XP_057806527.1 |
Pfam | PF05889 |
SepSecS | Domain | 167 | 293 | 5e-05 | 22.9 | O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS |
XP_057806527.1 |
Pfam | PF03711 |
OKR_DC_1_C | Domain | 473 | 533 | 4.4e-10 | 40.1 | Orn/Lys/Arg decarboxylase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。