当前解析结果
SmilChr04G002243| 统一新 Gene ID | SmilChr04G002243 |
|---|---|
| 名称 | SmilChr04G002243 |
| 描述 | pollen receptor-like kinase 1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 36223288 - 36225479 / - |
| NCBI Gene ID | LOC131021388 |
|---|---|
| GeneID | 131021388 |
| locus_tag | - |
| NCBI Name | LOC131021388 |
| 原始查询 | SmilChr04G002243 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen receptor-like kinase 1 |
| 产物 | pollen receptor-like kinase 1 |
| Arabidopsis | AT5G35390 (PRK1)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833500] identity=49.4; qcov=1.01; evalue=0; confidence=high |
| Rice | Os08g0521200 (OsRLCK258)- identity=40.6; qcov=1.08; evalue=2.46e-155; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021388 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057806540.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057806540.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057806540.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057806540.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057806540.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:36223452 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr4:36223548 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr4:36223627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:36223638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C21,C29 |
Chr4:36223690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C14,C2,C47 |
Chr4:36223923 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:36224268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:36224271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:36224283 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,C23 |
Chr4:36224337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr4:36224349 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B93 |
Chr4:36224367 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,B69,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806540.1PF08263
LRRNT_2 34-71 aa
PF00560
LRR_1 124-140 aa
PF13855
LRR_8 124-182 aa
PF00560
LRR_1 148-170 aa
PF00560
LRR_1 195-216 aa
PF00069
Pkinase 349-603 aa
PF07714
PK_Tyr_Ser-Thr 349-604 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806540.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 34 | 71 | 1.2e-08 | 35.8 | Leucine rich repeat N-terminal domain |
XP_057806540.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 124 | 140 | 2.9e-13 | 47.9 | Leucine Rich Repeat |
XP_057806540.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 124 | 182 | 6.2e-12 | 45.8 | Leucine rich repeat |
XP_057806540.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 148 | 170 | 2.9e-13 | 47.9 | Leucine Rich Repeat |
XP_057806540.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 195 | 216 | 2.9e-13 | 47.9 | Leucine Rich Repeat |
XP_057806540.1 |
Pfam | PF00069 |
Pkinase | Domain | 349 | 603 | 1.3e-24 | 87.8 | Protein kinase domain |
XP_057806540.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 349 | 604 | 4.3e-29 | 102.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。