Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002247`

染色体: Chr04 坐标: 36332158-36339168 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002247`
名称	SmilChr04G002247
描述	26S proteasome regulatory subunit RPN13
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	36332158 - 36339168 / `+`

ID 对照

NCBI Gene ID	`LOC131021392`
GeneID	`131021392`
locus_tag	`-`
NCBI Name	`LOC131021392`
原始查询	`SmilChr04G002247`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome regulatory subunit RPN13
产物	26S proteasome regulatory subunit RPN13
Arabidopsis	`AT2G26590` (RPN13) regulatory particle non-ATPase 13 [Source:NCBI gene (formerly Entrezgene);Acc:817200] identity=66.5; qcov=0.929; evalue=1.1e-125; confidence=high
Rice	`Os05g0594800` - identity=65.8; qcov=0.997; evalue=1.88e-128; confidence=high
GO	GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008541 (proteasome regulatory particle, lid subcomplex); GO:0043130 (ubiquitin binding); GO:0061133 (endopeptidase activator activity); GO:0070628 (proteasome binding)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF04683 (Rpn13_ADRM1_Pru); PF16550 (RPN13_C)
InterPro	-
eggNOG	-
NR	GeneID:131021392

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057806555.1`
2	Cytoplasm	细胞质	1.00000	`XP_057806555.1`
3	Cytosol	细胞质基质	1.00000	`XP_057806555.1`
4	Nucleoplasm	核质	0.80000	`XP_057806559.1`
5	Chromosome	染色体	0.00000	`XP_057806555.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:36335754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B102,C8
`Chr4:36337367`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr4:36337611`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B102,B124,C8,D4
`Chr4:36337666`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C30
`Chr4:36337666`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr4:36338213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C59,C84
`Chr4:36338375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,C57
`Chr4:36338376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr4:36338875`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806555.1

314 aa

157

314

Rpn13_ADRM1_Pru

RPN13_C

PF04683 Rpn13_ADRM1_Pru 12-108 aa PF16550 RPN13_C 176-283 aa

XP_057806556.1

314 aa

157

314

Rpn13_ADRM1_Pru

RPN13_C

PF04683 Rpn13_ADRM1_Pru 12-108 aa PF16550 RPN13_C 176-283 aa

XP_057806557.1

312 aa

156

312

Rpn13_ADRM1_Pru

RPN13_C

PF04683 Rpn13_ADRM1_Pru 12-108 aa PF16550 RPN13_C 176-281 aa

XP_057806558.1

312 aa

156

312

Rpn13_ADRM1_Pru

RPN13_C

PF04683 Rpn13_ADRM1_Pru 12-108 aa PF16550 RPN13_C 176-281 aa

XP_057806559.1

296 aa

148

296

Rpn13_ADRM1_Pru

RPN13_C

PF04683 Rpn13_ADRM1_Pru 7-90 aa PF16550 RPN13_C 158-265 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806555.1`	Pfam	`PF04683`	Rpn13_ADRM1_Pru	Domain	12	108	1.2e-29	103.4	Proteasome complex subunit Rpn13, Pru domain
`XP_057806555.1`	Pfam	`PF16550`	RPN13_C	Domain	176	283	6.6e-24	84.9	UCH-binding domain
`XP_057806556.1`	Pfam	`PF04683`	Rpn13_ADRM1_Pru	Domain	12	108	1.2e-29	103.4	Proteasome complex subunit Rpn13, Pru domain
`XP_057806556.1`	Pfam	`PF16550`	RPN13_C	Domain	176	283	6.6e-24	84.9	UCH-binding domain
`XP_057806557.1`	Pfam	`PF04683`	Rpn13_ADRM1_Pru	Domain	12	108	1.2e-29	103.5	Proteasome complex subunit Rpn13, Pru domain
`XP_057806557.1`	Pfam	`PF16550`	RPN13_C	Domain	176	281	4.8e-24	85.4	UCH-binding domain
`XP_057806558.1`	Pfam	`PF04683`	Rpn13_ADRM1_Pru	Domain	12	108	1.2e-29	103.5	Proteasome complex subunit Rpn13, Pru domain
`XP_057806558.1`	Pfam	`PF16550`	RPN13_C	Domain	176	281	4.8e-24	85.4	UCH-binding domain
`XP_057806559.1`	Pfam	`PF04683`	Rpn13_ADRM1_Pru	Domain	7	90	6.6e-26	91.4	Proteasome complex subunit Rpn13, Pru domain
`XP_057806559.1`	Pfam	`PF16550`	RPN13_C	Domain	158	265	6e-24	85.1	UCH-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057950572.1
AATGTTAATTGGATTCCATGAAAGCCCAATTTCCACTCTATTTGGCCCAGCTGCCTACCTCCTACTGTCAACGTCGGCTCAAAATCATATTTAAATCTCTCTCTCCTCTCTCTCTCTGCCCCTTCTCTCTCTGCACGTTTGCTTACAGACAGCCAAAACAGTCATTTTCAATAAAAGTGATATACGAGGGTCGAGGGATATAAAGAAGGTTTTTGCTTTGCTCATGGCTTCTTTGGCAAATATTCAGGAAGTTTTTCTGG...

XM_057950574.1
AGCTGCCTACCTCCTACTGTCAACGTCGGCTCAAAATCATATTTAAATCTCTCTCTCCTCTCTCTCTCTGCCCCTTCTCTCTCTGCACGTTTGCTTACAGACAGCCAAAACAGTCATTTTCAATAAAAGTGATATACGAGGGTCGAGGGATATAAAGAAGGTTTTTGCTTTGCTCATGGCTTCTTTGGCAAATATTCAGGAAGTTTTTCTGGAATTTCGTGCTGGGAAAATGCTTATGGATGGAATTCGTGTGCTGCCTG...

CDS

5 records

下载 CDS FASTA

LOC131021392
ATGGCTTCTTTGGCAAATATTCAGGAAGTTTTTCTGGAATTTCGTGCTGGGAAAATGCTTATGGATGGAATTCGTGTGCTGCCTGATTCTCGTAAAGGGCTTGTTCGTATTGGGAGGGGAGAAGAAGGACTGGTGCATTTCCAATGGCTTGACAGATCCCTAAACATAGTAGAGGATGACCAAATTGTTTTTCCTGATGAGGCAGGATTTGAGAAGGTTAATCAATCTTCTGGAAGAGTATACATCCTGAAGTTTCGTAC...

Protein

5 records

下载 Protein FASTA

XP_057806555.1
MASLANIQEVFLEFRAGKMLMDGIRVLPDSRKGLVRIGRGEEGLVHFQWLDRSLNIVEDDQIVFPDEAGFEKVNQSSGRVYILKFRTDDRKFFFWMQEPKAENDTQLCNSVNFYLNQPLELPVEGEPDASVPVQSSEVILEDDISSRAGDLVGPSMGAEVSSDVTSAGPVKLADLQRILSNIGSSDVSEDPDAGLGLGDILKPEFLLPHIEELHLDQELTSYLPELQGKWTPEELLELLQSPPFRQQLDSFTYVLRTGQV...

XP_057806556.1
MASLANIQEVFLEFRAGKMLMDGIRVLPDSRKGLVRIGRGEEGLVHFQWLDRSLNIVEDDQIVFPDEAGFEKVNQSSGRVYILKFRTDDRKFFFWMQEPKAENDTQLCNSVNFYLNQPLELPVEGEPDASVPVQSSEVILEDDISSRAGDLVGPSMGAEVSSDVTSAGPVKLADLQRILSNIGSSDVSEDPDAGLGLGDILKPEFLLPHIEELHLDQELTSYLPELQGKWTPEELLELLQSPPFRQQLDSFTYVLRTGQV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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