当前解析结果
SmilChr04G002263| 统一新 Gene ID | SmilChr04G002263 |
|---|---|
| 名称 | SmilChr04G002263 |
| 描述 | uncharacterized SmilChr04G002263 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 36616235 - 36619089 / - |
| NCBI Gene ID | LOC131023379 |
|---|---|
| GeneID | 131023379 |
| locus_tag | - |
| NCBI Name | LOC131023379 |
| 原始查询 | SmilChr04G002263 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | ATMG00750- identity=37.5; qcov=0.086; evalue=4.55e-08; confidence=weak |
| Rice | Os08g0202300- identity=40.4; qcov=0.179; evalue=6.61e-31; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023379 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057808901.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057808901.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057808901.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057808901.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057808901.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:36616236 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr4:36616353 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B128,B131,B53,C2 |
Chr4:36616355 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B124,B59,C75 |
Chr4:36616371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B81,C6 |
Chr4:36616390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B32,B73,C11,C23 |
Chr4:36616394 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B120,B131,B48,C24 |
Chr4:36616396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,B119 |
Chr4:36616402 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B73,C11,C23 |
Chr4:36616420 |
CT |
C |
1bp_deletion | frameshift_variant | 11 | A7,B135,B32,B4,B68,C30,C36,C40,C60,C64,C66 |
Chr4:36616425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B73,C11,C23 |
Chr4:36616426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,A2 |
Chr4:36616435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057808901.1PF00078
RVT_1 2-152 aa
PF17919
RT_RNaseH_2 154-251 aa
PF17917
RT_RNaseH 181-280 aa
PF13456
RVT_3 316-434 aa
PF17921
Integrase_H2C2 524-572 aa
PF00665
rve 590-687 aa
PF31073
DUF8803 811-841 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057808901.1 |
Pfam | PF00078 |
RVT_1 | Domain | 2 | 152 | 1.4e-30 | 107.4 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057808901.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 154 | 251 | 1.1e-17 | 64.6 | RNase H-like domain found in reverse transcriptase |
XP_057808901.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 181 | 280 | 4.4e-15 | 56.4 | RNase H-like domain found in reverse transcriptase |
XP_057808901.1 |
Pfam | PF13456 |
RVT_3 | Domain | 316 | 434 | 3.4e-11 | 43.8 | Reverse transcriptase-like |
XP_057808901.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 524 | 572 | 2.1e-12 | 47.7 | Integrase zinc binding domain |
XP_057808901.1 |
Pfam | PF00665 |
rve | Domain | 590 | 687 | 7e-20 | 71.9 | Integrase core domain |
XP_057808901.1 |
Pfam | PF31073 |
DUF8803 | Domain | 811 | 841 | 6.8e-08 | 33.0 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。