Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002304`

染色体: Chr04 坐标: 37309996-37315552 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002304`
名称	SmilChr04G002304
描述	protein trichome birefringence-like 14
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	37309996 - 37315552 / `-`

ID 对照

NCBI Gene ID	`LOC131021444`
GeneID	`131021444`
locus_tag	`-`
NCBI Name	`LOC131021444`
原始查询	`SmilChr04G002304`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein trichome birefringence-like 14
产物	protein trichome birefringence-like 14
Arabidopsis	`AT5G20680` (TBL16) TRICHOME BIREFRINGENCE-LIKE 16 [Source:NCBI gene (formerly Entrezgene);Acc:832191] identity=52.3; qcov=1; evalue=0; confidence=high
Rice	`Os11g0241900` (OsTBL35) - identity=70.6; qcov=0.629; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0009834 (plant-type secondary cell wall biogenesis); GO:0010411 (xyloglucan metabolic process); GO:0016407 (acetyltransferase activity); GO:0045492 (xylan biosynthetic process); GO:1990937 (GO:1990937)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:131021444

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057806614.1`
2	Nucleus	细胞核	0.00000	`XP_057806614.1`
3	Chromosome	染色体	0.00000	`XP_057806614.1`
4	Centromere	着丝粒	0.00000	`XP_057806614.1`
5	Chromatin	染色质	0.00000	`XP_057806614.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:37310247`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B83
`Chr4:37310247`	`AC`	`A`	1bp_deletion	CDS_variant	1	B83
`Chr4:37310283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B98,C2,C44,C80
`Chr4:37310540`	`GGA`	`G`	2bp_deletion	frameshift_variant	1	B7
`Chr4:37310540`	`GGA`	`G`	2bp_deletion	CDS_variant	1	B7
`Chr4:37310708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,C77
`Chr4:37310728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B98,C2,C44,C80
`Chr4:37310891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B89,C26
`Chr4:37312693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C44
`Chr4:37313402`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B98,C2,C26,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806614.1

550 aa

275

550

PMR5N

PC-Esterase

PF14416 PMR5N 210-263 aa PF13839 PC-Esterase 266-548 aa

XP_057806615.1

547 aa

274

547

PMR5N

PC-Esterase

PF14416 PMR5N 207-260 aa PF13839 PC-Esterase 263-545 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806614.1`	Pfam	`PF14416`	PMR5N	Domain	210	263	3.9e-14	53.4	PMR5 N terminal Domain
`XP_057806614.1`	Pfam	`PF13839`	PC-Esterase	Family	266	548	2.2e-74	251.7	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057806615.1`	Pfam	`PF14416`	PMR5N	Domain	207	260	3.9e-14	53.4	PMR5 N terminal Domain
`XP_057806615.1`	Pfam	`PF13839`	PC-Esterase	Family	263	545	2.2e-74	251.7	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057950631.1
AAATGGAATTATACATATGAAGAATAGAAGGGGCTCCACTCCAAGATTTATTCTGCCCGACCATTAATGACGATCTGCAGCGATTAAATTAAATTAAATAAGTAGTTAAGATGAGGTAGTCTTAATAATCTCCCTGTCGTCTCAGTTCTAAATCTATAATCTACTATTTGATTTAAATCCTCGCACATATTTCTGGTGATTTCCTCCCGCCGTGCTCCGCCCCGCCCCTCTGTCAACCAGCTATACTTGCAGTTTAATTT...

XM_057950632.1
GAATAGAAGGGGCTCCACTCCAAGATTTATTCTGCCCGACCATTAATGACGATCTGCAGCGATTAAATTAAATTAAATAAGTAGTTAAGATGAGGTAGTCTTAATAATCTCCCTGTCGTCTCAGTTCTAAATCTATAATCTACTATTTGATTTAAATCCTCGCACATATTTCTGGTGATTTCCTCCCGCCGTGCTCCGCCCCGCCCCTCTGTCAACCAGCTATACTTGCAGTTTAATTTTCTCTCTCGCGCGCGCTGCGC...

CDS

2 records

下载 CDS FASTA

LOC131021444
ATGAAAGGAGGCATTCAAGGACTAAAGATCTCACAGGTCTCCCTCATCCTCATCGGTTTAGTCTGCATGACTGTGCTTGTATTGGCATGGACAAAGACCTCATTTCTTGCTGCTTTCATCCCATCTCCGAATCGCATCCTGCCACTGGATCTGGGTCCAGGAGAAATTTTCAAGGGGGGCAACATTTCAGCACAAACAAGGACGGAACAAGTTGAATCGTTTGCTTCACCTGGTGTGATAGAACAAAAAGGCGAGAGAGA...

LOC131021444
ATGAAAGGAGGCATTCAAGGACTAAAGATCTCACAGGTCTCCCTCATCCTCATCGGTTTAGTCTGCATGACTGTGCTTGTATTGGCATGGACAAAGACCTCATTTCTTGCTGCTTTCATCCCATCTCCGAATCGCATCCTGCCACTGGATCTGGATGAATCAGGTCCAGGAGAAATTTTCAAGGGGGGCAACATTTCAGCACAAACAAGGACGGAACAAGTTGAATCGTTTGCTTCACCTGGTGTGATAGAACAAAAAGG...

Protein

2 records

下载 Protein FASTA

XP_057806614.1
MKGGIQGLKISQVSLILIGLVCMTVLVLAWTKTSFLAAFIPSPNRILPLDLDESGPGEIFKGGNISAQTRTEQVESFASPGVIEQKGERENIDNSKNTNKEENPSSVKKRSGSDELSEGKTKSTQVDIVVKNSSASESPVRREENGTLSSVDKNKESHSSVPEGTGSEEPSGGKNKSKELTIVPQNSPSVGSFHKGEQTVNLSATVGNKGCNYAKGKWAIDDNRPLYSGFGCKQWLSSMWACRLTQRMDFEYEKLRWQPQ...

XP_057806615.1
MKGGIQGLKISQVSLILIGLVCMTVLVLAWTKTSFLAAFIPSPNRILPLDLGPGEIFKGGNISAQTRTEQVESFASPGVIEQKGERENIDNSKNTNKEENPSSVKKRSGSDELSEGKTKSTQVDIVVKNSSASESPVRREENGTLSSVDKNKESHSSVPEGTGSEEPSGGKNKSKELTIVPQNSPSVGSFHKGEQTVNLSATVGNKGCNYAKGKWAIDDNRPLYSGFGCKQWLSSMWACRLTQRMDFEYEKLRWQPQDCK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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