Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002328`

染色体: Chr04 坐标: 37586111-37596932 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002328`
名称	SmilChr04G002328
描述	GCN5-related N-acetyltransferase 6, chloroplastic-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	37586111 - 37596932 / `+`

ID 对照

NCBI Gene ID	`LOC131021466`
GeneID	`131021466`
locus_tag	`-`
NCBI Name	`LOC131021466`
原始查询	`SmilChr04G002328`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GCN5-related N-acetyltransferase 6, chloroplastic-like
产物	GCN5-related N-acetyltransferase 6%2C chloroplastic-like
Arabidopsis	`AT2G06025` (AT2G06025) Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:815157] identity=55.7; qcov=0.786; evalue=1.28e-57; confidence=high
Rice	`Os03g0177000` - identity=47.5; qcov=0.786; evalue=9.03e-42; confidence=medium
GO	GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups)
KEGG	-
Pfam	PF00583 (Acetyltransf_1); PF08445 (FR47); PF13302 (Acetyltransf_3); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10)
InterPro	-
eggNOG	-
NR	GeneID:131021466

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057806641.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057806641.1`
3	Nucleus	细胞核	0.00000	`XP_057806641.1`
4	Chromosome	染色体	0.00000	`XP_057806641.1`
5	Centromere	着丝粒	0.00000	`XP_057806641.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:37586393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B112,C57,D3
`Chr4:37596061`	`C`	`T`	EMS_canonical_SNV	stop_gained	40	A16,A23,A3,B10,B103,B107,B110,B112,B113,B115,B126,B133,B136,B139,B15,B17,B27,B42,B43,B5,B51,B52,B57,B64,B66,B75,B84,C17,C22,C27,C40,C42,C49,C55,C63,C74,C87,C9,D2,D7
`Chr4:37596075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,C37
`Chr4:37596078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057806641.1

255 aa

128

255

Acetyltransf_1

Acetyltransf_7

FR47

Acetyltransf_10

Acetyltransf_3

PF00583 Acetyltransf_1 167-224 aa PF13508 Acetyltransf_7 167-225 aa PF08445 FR47 167-229 aa PF13673 Acetyltransf_10 167-229 aa PF13302 Acetyltransf_3 173-225 aa

XP_057806642.1

254 aa

127

254

Acetyltransf_1

Acetyltransf_7

FR47

Acetyltransf_10

Acetyltransf_3

PF00583 Acetyltransf_1 166-223 aa PF13508 Acetyltransf_7 166-224 aa PF08445 FR47 166-228 aa PF13673 Acetyltransf_10 166-228 aa PF13302 Acetyltransf_3 172-224 aa

XP_057806644.1

253 aa

126

253

Acetyltransf_1

Acetyltransf_7

FR47

Acetyltransf_10

PF00583 Acetyltransf_1 167-222 aa PF13508 Acetyltransf_7 167-223 aa PF08445 FR47 167-227 aa PF13673 Acetyltransf_10 167-227 aa

XP_057806646.1

201 aa

100

201

Acetyltransf_1

PF00583 Acetyltransf_1 167-201 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057806641.1`	Pfam	`PF00583`	Acetyltransf_1	Family	167	224	4e-13	50.4	Acetyltransferase (GNAT) family
`XP_057806641.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	167	225	4.1e-10	40.6	Acetyltransferase (GNAT) domain
`XP_057806641.1`	Pfam	`PF08445`	FR47	Family	167	229	2.4e-09	37.8	FR47-like protein
`XP_057806641.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	167	229	5.5e-09	36.8	Acetyltransferase (GNAT) domain
`XP_057806641.1`	Pfam	`PF13302`	Acetyltransf_3	Domain	173	225	6.7e-06	27.6	Acetyltransferase (GNAT) domain
`XP_057806642.1`	Pfam	`PF00583`	Acetyltransf_1	Family	166	223	4e-13	50.4	Acetyltransferase (GNAT) family
`XP_057806642.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	166	224	4.1e-10	40.6	Acetyltransferase (GNAT) domain
`XP_057806642.1`	Pfam	`PF08445`	FR47	Family	166	228	2.6e-09	37.6	FR47-like protein
`XP_057806642.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	166	228	6e-09	36.7	Acetyltransferase (GNAT) domain
`XP_057806642.1`	Pfam	`PF13302`	Acetyltransf_3	Domain	172	224	7.6e-06	27.4	Acetyltransferase (GNAT) domain
`XP_057806644.1`	Pfam	`PF00583`	Acetyltransf_1	Family	167	222	3.4e-11	44.2	Acetyltransferase (GNAT) family
`XP_057806644.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	167	223	1.7e-09	38.7	Acetyltransferase (GNAT) domain
`XP_057806644.1`	Pfam	`PF08445`	FR47	Family	167	227	3.7e-09	37.2	FR47-like protein
`XP_057806644.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	167	227	1.9e-08	35.1	Acetyltransferase (GNAT) domain
`XP_057806646.1`	Pfam	`PF00583`	Acetyltransf_1	Family	167	201	0.00012	23.1	Acetyltransferase (GNAT) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057950658.1
AGCTGAAACCATTATAGTCCAAAACTTGAAGAGGAGCGACAGCTGGTTGGTTAGAAAGGAAAGAGCCGAAAAAGAAACTTGTGATTCATGTCGACGATTGCTCTACACAGACCAAATTTCTCAAGAAGATGGAGAATGGTGCAGGCTTCTGCAAGCAAGGGTGCAGGCTTCTTGAAGAAATTTAGTCCTTCAAACATCATATTCGACACACCGCGTGAAGCTCGACACCATGAGGAATACTGGATGGCCGCTTGGCTGAG...

XM_057950663.1
AGCTGAAACCATTATAGTCCAAAACTTGAAGAGGAGCGACAGCTGGTTGGTTAGAAAGGAAAGAGCCGAAAAAGAAACTTGTGATTCATGTCGACGATTGCTCTACACAGACCAAATTTCTCAAGAAGATGGAGAATGGTGCAGGCTTCTGCAAGCAAGGGTGCAGGCTTCTTGAAGAAATTTAGTCCTTCAAACATCATATTCGACACACCGCGTGAAGCTCGACACCATGAGGAATACTGGATGGCCGCTTGGCTGAG...

CDS

5 records

下载 CDS FASTA

LOC131021466
ATGTCGACGATTGCTCTACACAGACCAAATTTCTCAAGAAGATGGAGAATGGTGCAGGCTTCTGCAAGCAAGGGTGCAGGCTTCTTGAAGAAATTTAGTCCTTCAAACATCATATTCGACACACCGCGTGAAGCTCGACACCATGAGGAATACTGGATGGCCGCTTGGCTGAGAGCAGAGAGCCACTGGGAAGGCCGAGAAAATGAACGATATGCTGAGAGTAACAGAAGAAAATTCGCCCAACAGGAGTTGAATGCGAT...

Protein

5 records

下载 Protein FASTA

XP_057806641.1
MSTIALHRPNFSRRWRMVQASASKGAGFLKKFSPSNIIFDTPREARHHEEYWMAAWLRAESHWEGRENERYAESNRRKFAQQELNAMTRRYNSKLGEKCMCIVMEGDVDGEDEVKKEDGELKHSILKSVAGTLDLSIQHLSHGQTFPGERLKHPLVCLLDRKSSICYGYIANLCIAKSARRQGVATTMLRYAISAANSNGAEKVFVHVHRHNKPARNLYQKIGFQVVDAASFQLYVEQTYLLCLDVSSCDVRLSI

XP_057806642.1
MSTIALHRPNFSRRWRMVQASASKGAGFLKKFSPSNIIFDTPREARHHEEYWMAAWLRAESHWEGRENERYAESNRRKFAQQELNAMTRRYNSKLGEKCMCIVMGDVDGEDEVKKEDGELKHSILKSVAGTLDLSIQHLSHGQTFPGERLKHPLVCLLDRKSSICYGYIANLCIAKSARRQGVATTMLRYAISAANSNGAEKVFVHVHRHNKPARNLYQKIGFQVVDAASFQLYVEQTYLLCLDVSSCDVRLSI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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